Total reads: 260005 Total joined: 5917 Average join len: 16.05 Stdev join len: 3.09 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 63.2% passed 5917 FASTQ recs (5917) 3742 Converted (3742, 63.2%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3N_truncated.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3N_truncated.fa 00:00 19Mb 3547 seqs, 1986 uniques, 1779 singletons (89.6%) 00:00 19Mb Min size 1, median 1, max 390, avg 1.79 00:00 19Mb 0.1% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3N_derep.fa 00:00 19Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3N_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3N_derep.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3N_derep.fa 00:00 6.3Mb Getting sizes 00:00 6.3Mb Sorting 207 sequences 00:00 6.3Mb 0.5% Writing output 00:00 6.3Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 34 OTUs, 7 chimeras (3.4%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3N_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3N_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:01 25Mb 47.9% Masking 00:01 25Mb 100.0% Masking 00:01 26Mb 0.1% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 23.0% Build index 00:02 82Mb 100.0% Build index 00:02 94Mb 2.9% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 0/34 chimeras found (0.0%) 00:02 96Mb 2.9% Writing 34 non-chimeras 00:02 96Mb 100.0% Writing 34 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3N_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3N_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching CSM5FZ3N_join.fq, 0.0% matched 00:01 54Mb 84.0% Searching CSM5FZ3N_join.fq, 68.5% matched 00:01 54Mb 100.0% Searching CSM5FZ3N_join.fq, 69.5% matched 00:00 3.3Mb 0.0% Rows 00:00 532Mb 100.0% Rows 00:00 532Mb Reading pointers...done. 00:00 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching CSM5FZ3N_nonchimeric.fa, 0.0% matched 00:01 727Mb 100.0% Searching CSM5FZ3N_nonchimeric.fa, 100.0% matched Total reads: 260005 Total joined: 5917 Average join len: 16.05 Stdev join len: 3.09 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 63.2% passed 5917 FASTQ recs (5917) 3742 Converted (3742, 63.2%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3N_truncated.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3N_truncated.fa 00:00 19Mb 3547 seqs, 1986 uniques, 1779 singletons (89.6%) 00:00 19Mb Min size 1, median 1, max 390, avg 1.79 00:00 19Mb 0.1% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3N_derep.fa 00:00 19Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3N_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3N_derep.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3N_derep.fa 00:00 6.3Mb Getting sizes 00:00 6.3Mb Sorting 207 sequences 00:00 6.3Mb 0.5% Writing output 00:00 6.3Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 35 OTUs, 6 chimeras (2.9%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3N_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3N_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:01 25Mb 72.3% Masking 00:01 25Mb 100.0% Masking 00:01 26Mb 0.1% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 38.8% Build index 00:02 82Mb 100.0% Build index 00:02 94Mb 2.8% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 0/35 chimeras found (0.0%) 00:02 96Mb 2.9% Writing 35 non-chimeras 00:02 96Mb 100.0% Writing 35 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3N_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3N_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching CSM5FZ3N_join.fq, 0.0% matched 00:00 55Mb 100.0% Searching CSM5FZ3N_join.fq, 69.6% matched 00:00 3.3Mb 0.0% Rows 00:01 199Mb 37.8% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching CSM5FZ3N_nonchimeric.fa, 0.0% matched 00:01 727Mb 100.0% Searching CSM5FZ3N_nonchimeric.fa, 100.0% matched Total reads: 260005 Total joined: 5917 Average join len: 16.05 Stdev join len: 3.09 00:00 47Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 63.2% passed 5917 FASTQ recs (5917) 3742 Converted (3742, 63.2%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3N_truncated.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3N_truncated.fa 00:00 19Mb 3547 seqs, 1986 uniques, 1779 singletons (89.6%) 00:00 19Mb Min size 1, median 1, max 390, avg 1.79 00:00 19Mb 0.1% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3N_derep.fa 00:00 19Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3N_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3N_derep.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3N_derep.fa 00:00 6.3Mb Getting sizes 00:00 6.3Mb Sorting 207 sequences 00:00 6.3Mb 0.5% Writing output 00:00 6.3Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 35 OTUs, 6 chimeras (2.9%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3N_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3N_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:01 26Mb 2.1% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 15.4% Build index 00:02 82Mb 100.0% Build index 00:02 93Mb 2.8% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 0/35 chimeras found (0.0%) 00:02 96Mb 2.9% Writing 35 non-chimeras 00:02 96Mb 100.0% Writing 35 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3N_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3N_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching CSM5FZ3N_join.fq, 0.0% matched 00:01 52Mb 0.2% Searching CSM5FZ3N_join.fq, 100.0% matched 00:01 55Mb 100.0% Searching CSM5FZ3N_join.fq, 69.6% matched 00:00 3.3Mb 0.0% Rows 00:00 532Mb 100.0% Rows 00:00 532Mb Reading pointers...done. 00:00 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching CSM5FZ3N_nonchimeric.fa, 0.0% matched 00:01 727Mb 100.0% Searching CSM5FZ3N_nonchimeric.fa, 100.0% matched Total reads: 260005 Total joined: 5917 Average join len: 16.05 Stdev join len: 3.09 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 63.2% passed 5917 FASTQ recs (5917) 3742 Converted (3742, 63.2%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3N_truncated.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3N_truncated.fa 00:00 19Mb 3547 seqs, 1986 uniques, 1779 singletons (89.6%) 00:00 19Mb Min size 1, median 1, max 390, avg 1.79 00:00 19Mb 0.1% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3N_derep.fa 00:00 19Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3N_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3N_derep.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3N_derep.fa 00:00 6.3Mb Getting sizes 00:00 6.3Mb Sorting 207 sequences 00:00 6.3Mb 0.5% Writing output 00:00 6.3Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 35 OTUs, 6 chimeras (2.9%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3N_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3N_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:01 25Mb 95.5% Masking 00:01 25Mb 100.0% Masking 00:01 26Mb 0.1% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 40.6% Build index 00:02 82Mb 100.0% Build index 00:02 95Mb 2.8% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 0/35 chimeras found (0.0%) 00:02 96Mb 2.9% Writing 35 non-chimeras 00:02 96Mb 100.0% Writing 35 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3N_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3N_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching CSM5FZ3N_join.fq, 0.0% matched 00:00 55Mb 100.0% Searching CSM5FZ3N_join.fq, 69.6% matched 00:00 3.3Mb 0.0% Rows 00:01 74Mb 12.8% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:02 709Mb 0.1% Searching CSM5FZ3N_nonchimeric.fa, 0.0% matched 00:02 727Mb 100.0% Searching CSM5FZ3N_nonchimeric.fa, 100.0% matched