Total reads: 238634 Total joined: 47361 Average join len: 6.60 Stdev join len: 2.50 00:00 48Mb 0.1% Filtering 00:01 48Mb 50.1% Filtering, 100.0% passed 00:01 15Mb 100.0% Filtering, 78.6% passed 47361 FASTQ recs (47.4k) 37220 Converted (37.2k, 78.6%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3X_truncated.fa 00:00 47Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3X_truncated.fa 00:00 26Mb 34933 seqs, 18530 uniques, 17067 singletons (92.1%) 00:00 26Mb Min size 1, median 1, max 3621, avg 1.89 00:00 26Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3X_derep.fa 00:01 26Mb 53.2% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3X_derep.fa 00:01 26Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3X_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3X_derep.fa 00:00 44Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3X_derep.fa 00:00 10.0Mb Getting sizes 00:00 10Mb Sorting 1463 sequences 00:00 10Mb 0.1% Writing output 00:00 10Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 31 OTUs, 21 chimeras (1.4%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3X_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3X_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:01 26Mb 26.0% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 49.1% Build index 00:02 82Mb 100.0% Build index 00:02 95Mb 3.1% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 0/31 chimeras found (0.0%) 00:02 96Mb 3.2% Writing 31 non-chimeras 00:02 96Mb 100.0% Writing 31 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3X_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3X_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching CSM5FZ3X_join.fq, 0.0% matched 00:01 54Mb 19.7% Searching CSM5FZ3X_join.fq, 68.2% matched 00:02 55Mb 93.7% Searching CSM5FZ3X_join.fq, 67.5% matched 00:02 55Mb 100.0% Searching CSM5FZ3X_join.fq, 68.1% matched 00:00 3.3Mb 0.0% Rows 00:01 406Mb 71.9% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching CSM5FZ3X_nonchimeric.fa, 0.0% matched 00:01 728Mb 100.0% Searching CSM5FZ3X_nonchimeric.fa, 61.3% matched Total reads: 238634 Total joined: 47361 Average join len: 6.60 Stdev join len: 2.50 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 78.6% passed 47361 FASTQ recs (47.4k) 37220 Converted (37.2k, 78.6%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3X_truncated.fa 00:00 47Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3X_truncated.fa 00:00 26Mb 34933 seqs, 18530 uniques, 17067 singletons (92.1%) 00:00 26Mb Min size 1, median 1, max 3621, avg 1.89 00:00 26Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3X_derep.fa 00:00 26Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3X_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3X_derep.fa 00:00 44Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3X_derep.fa 00:00 10.0Mb Getting sizes 00:00 10Mb Sorting 1463 sequences 00:00 10Mb 0.1% Writing output 00:00 10Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 32 OTUs, 22 chimeras (1.5%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3X_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3X_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:01 26Mb 7.6% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 59.9% Build index 00:02 82Mb 100.0% Build index 00:02 93Mb 3.0% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 1/32 chimeras found (3.1%) 00:02 96Mb 3.1% Writing 31 non-chimeras 00:02 96Mb 100.0% Writing 31 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3X_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3X_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching CSM5FZ3X_join.fq, 0.0% matched 00:01 54Mb 53.0% Searching CSM5FZ3X_join.fq, 72.4% matched 00:01 54Mb 100.0% Searching CSM5FZ3X_join.fq, 68.2% matched 00:00 3.3Mb 0.0% Rows 00:01 429Mb 75.9% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching CSM5FZ3X_nonchimeric.fa, 0.0% matched 00:01 728Mb 100.0% Searching CSM5FZ3X_nonchimeric.fa, 61.3% matched Total reads: 238634 Total joined: 47361 Average join len: 6.60 Stdev join len: 2.50 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 78.6% passed 47361 FASTQ recs (47.4k) 37220 Converted (37.2k, 78.6%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3X_truncated.fa 00:00 47Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3X_truncated.fa 00:00 26Mb 34933 seqs, 18530 uniques, 17067 singletons (92.1%) 00:00 26Mb Min size 1, median 1, max 3621, avg 1.89 00:00 26Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3X_derep.fa 00:00 26Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3X_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3X_derep.fa 00:00 44Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3X_derep.fa 00:00 10.0Mb Getting sizes 00:00 10Mb Sorting 1463 sequences 00:00 10Mb 0.1% Writing output 00:00 10Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 32 OTUs, 22 chimeras (1.5%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3X_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3X_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:01 25Mb 87.4% Masking 00:01 25Mb 100.0% Masking 00:01 26Mb 0.1% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 48.0% Build index 00:02 82Mb 100.0% Build index 00:02 95Mb 3.0% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 1/32 chimeras found (3.1%) 00:02 96Mb 3.1% Writing 31 non-chimeras 00:02 96Mb 100.0% Writing 31 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3X_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3X_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching CSM5FZ3X_join.fq, 0.0% matched 00:01 55Mb 34.9% Searching CSM5FZ3X_join.fq, 67.8% matched 00:01 55Mb 100.0% Searching CSM5FZ3X_join.fq, 68.2% matched 00:00 3.3Mb 0.0% Rows 00:01 172Mb 32.7% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching CSM5FZ3X_nonchimeric.fa, 0.0% matched 00:01 728Mb 100.0% Searching CSM5FZ3X_nonchimeric.fa, 61.3% matched Total reads: 238634 Total joined: 47361 Average join len: 6.60 Stdev join len: 2.50 00:00 47Mb 0.1% Filtering 00:01 48Mb 0.2% Filtering, 0.0% passed 00:01 15Mb 100.0% Filtering, 78.6% passed 47361 FASTQ recs (47.4k) 37220 Converted (37.2k, 78.6%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3X_truncated.fa 00:00 47Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3X_truncated.fa 00:00 26Mb 34933 seqs, 18530 uniques, 17067 singletons (92.1%) 00:00 26Mb Min size 1, median 1, max 3621, avg 1.89 00:00 26Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3X_derep.fa 00:00 26Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3X_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3X_derep.fa 00:00 44Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3X_derep.fa 00:00 10.0Mb Getting sizes 00:00 10Mb Sorting 1463 sequences 00:00 10Mb 0.1% Writing output 00:00 10Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 33 OTUs, 21 chimeras (1.4%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3X_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3X_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:01 46Mb 18.2% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:01 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:01 25Mb 0.1% Masking 00:01 25Mb 100.0% Masking 00:01 26Mb 0.1% Word stats 00:02 26Mb 90.1% Word stats 00:02 26Mb 100.0% Word stats 00:02 26Mb 100.0% Alloc rows 00:02 82Mb 0.1% Build index 00:03 82Mb 47.5% Build index 00:03 82Mb 100.0% Build index 00:03 93Mb 2.9% Search 0/1 chimeras found (0.0%) 00:03 96Mb 100.0% Search 2/33 chimeras found (6.1%) 00:03 96Mb 3.0% Writing 31 non-chimeras 00:03 96Mb 100.0% Writing 31 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3X_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3X_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching CSM5FZ3X_join.fq, 0.0% matched 00:01 55Mb 42.9% Searching CSM5FZ3X_join.fq, 70.8% matched 00:02 55Mb 93.9% Searching CSM5FZ3X_join.fq, 67.6% matched 00:02 55Mb 100.0% Searching CSM5FZ3X_join.fq, 68.2% matched 00:00 3.3Mb 0.0% Rows 00:01 531Mb 99.3% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching CSM5FZ3X_nonchimeric.fa, 0.0% matched 00:01 728Mb 100.0% Searching CSM5FZ3X_nonchimeric.fa, 61.3% matched