Total reads: 198456 Total joined: 10027 Average join len: 7.80 Stdev join len: 4.07 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 77.5% passed 10027 FASTQ recs (10.0k) 7768 Converted (7768, 77.5%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3Z_truncated.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3Z_truncated.fa 00:00 20Mb 7286 seqs, 4212 uniques, 3914 singletons (92.9%) 00:00 20Mb Min size 1, median 1, max 723, avg 1.73 00:00 20Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3Z_derep.fa 00:01 20Mb 43.2% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3Z_derep.fa 00:01 20Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3Z_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3Z_derep.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3Z_derep.fa 00:00 6.9Mb Getting sizes 00:00 6.9Mb Sorting 298 sequences 00:00 6.9Mb 0.3% Writing output 00:00 6.9Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 45Mb 100.0% 12 OTUs, 5 chimeras (1.7%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3Z_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3Z_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:01 26Mb 68.9% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 72.4% Build index 00:02 82Mb 100.0% Build index 00:02 95Mb 7.7% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 0/12 chimeras found (0.0%) 00:02 96Mb 8.3% Writing 12 non-chimeras 00:02 96Mb 100.0% Writing 12 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3Z_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3Z_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching CSM5FZ3Z_join.fq, 0.0% matched 00:00 54Mb 100.0% Searching CSM5FZ3Z_join.fq, 63.0% matched 00:00 3.3Mb 0.0% Rows 00:01 231Mb 43.1% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:02 709Mb 0.1% Searching CSM5FZ3Z_nonchimeric.fa, 0.0% matched 00:02 727Mb 100.0% Searching CSM5FZ3Z_nonchimeric.fa, 83.3% matched Total reads: 198456 Total joined: 10027 Average join len: 7.80 Stdev join len: 4.07 00:00 47Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 77.5% passed 10027 FASTQ recs (10.0k) 7768 Converted (7768, 77.5%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3Z_truncated.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3Z_truncated.fa 00:00 20Mb 7286 seqs, 4212 uniques, 3914 singletons (92.9%) 00:00 20Mb Min size 1, median 1, max 723, avg 1.73 00:00 20Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3Z_derep.fa 00:00 20Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3Z_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3Z_derep.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3Z_derep.fa 00:00 6.9Mb Getting sizes 00:00 6.9Mb Sorting 298 sequences 00:00 6.9Mb 0.3% Writing output 00:00 6.9Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 45Mb 100.0% 12 OTUs, 5 chimeras (1.7%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3Z_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3Z_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:01 26Mb 42.2% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 76.8% Build index 00:02 82Mb 100.0% Build index 00:02 93Mb 7.7% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 0/12 chimeras found (0.0%) 00:02 96Mb 8.3% Writing 12 non-chimeras 00:02 96Mb 100.0% Writing 12 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3Z_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3Z_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching CSM5FZ3Z_join.fq, 0.0% matched 00:00 55Mb 100.0% Searching CSM5FZ3Z_join.fq, 62.9% matched 00:00 3.3Mb 0.0% Rows 00:01 430Mb 76.1% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching CSM5FZ3Z_nonchimeric.fa, 0.0% matched 00:01 727Mb 100.0% Searching CSM5FZ3Z_nonchimeric.fa, 83.3% matched Total reads: 198456 Total joined: 10027 Average join len: 7.80 Stdev join len: 4.07 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 77.5% passed 10027 FASTQ recs (10.0k) 7768 Converted (7768, 77.5%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3Z_truncated.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3Z_truncated.fa 00:00 20Mb 7286 seqs, 4212 uniques, 3914 singletons (92.9%) 00:00 20Mb Min size 1, median 1, max 723, avg 1.73 00:00 20Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3Z_derep.fa 00:00 20Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3Z_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3Z_derep.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3Z_derep.fa 00:00 6.9Mb Getting sizes 00:00 6.9Mb Sorting 298 sequences 00:00 6.9Mb 0.3% Writing output 00:00 6.9Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 45Mb 100.0% 12 OTUs, 5 chimeras (1.7%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3Z_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3Z_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:01 25Mb 12.9% Masking 00:01 25Mb 100.0% Masking 00:01 26Mb 0.1% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 20.6% Build index 00:02 82Mb 100.0% Build index 00:02 94Mb 7.7% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 0/12 chimeras found (0.0%) 00:02 96Mb 8.3% Writing 12 non-chimeras 00:02 96Mb 100.0% Writing 12 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3Z_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3Z_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching CSM5FZ3Z_join.fq, 0.0% matched 00:00 54Mb 100.0% Searching CSM5FZ3Z_join.fq, 63.0% matched 00:01 3.3Mb 0.0% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching CSM5FZ3Z_nonchimeric.fa, 0.0% matched 00:01 727Mb 100.0% Searching CSM5FZ3Z_nonchimeric.fa, 83.3% matched Total reads: 198456 Total joined: 10027 Average join len: 7.80 Stdev join len: 4.07 00:00 48Mb 0.1% Filtering 00:01 48Mb 0.2% Filtering, 100.0% passed 00:01 15Mb 100.0% Filtering, 77.5% passed 10027 FASTQ recs (10.0k) 7768 Converted (7768, 77.5%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3Z_truncated.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3Z_truncated.fa 00:00 20Mb 7286 seqs, 4212 uniques, 3914 singletons (92.9%) 00:00 20Mb Min size 1, median 1, max 723, avg 1.73 00:00 20Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3Z_derep.fa 00:00 20Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3Z_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3Z_derep.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3Z_derep.fa 00:00 6.9Mb Getting sizes 00:00 6.9Mb Sorting 298 sequences 00:00 6.9Mb 0.3% Writing output 00:00 6.9Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 45Mb 100.0% 12 OTUs, 5 chimeras (1.7%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3Z_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3Z_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:01 25Mb 98.3% Masking 00:01 25Mb 100.0% Masking 00:01 26Mb 0.1% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 32.6% Build index 00:02 82Mb 100.0% Build index 00:02 94Mb 7.7% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 0/12 chimeras found (0.0%) 00:02 96Mb 8.3% Writing 12 non-chimeras 00:02 96Mb 100.0% Writing 12 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3Z_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ3Z_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching CSM5FZ3Z_join.fq, 0.0% matched 00:01 54Mb 59.9% Searching CSM5FZ3Z_join.fq, 64.7% matched 00:01 54Mb 100.0% Searching CSM5FZ3Z_join.fq, 63.0% matched 00:00 3.3Mb 0.0% Rows 00:00 532Mb 100.0% Rows 00:00 532Mb Reading pointers...done. 00:00 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching CSM5FZ3Z_nonchimeric.fa, 0.0% matched 00:01 727Mb 100.0% Searching CSM5FZ3Z_nonchimeric.fa, 83.3% matched