Total reads: 182925 Total joined: 13340 Average join len: 16.52 Stdev join len: 2.24 00:00 47Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 62.8% passed 13340 FASTQ recs (13.3k) 8376 Converted (8376, 62.8%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ4G_truncated.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ4G_truncated.fa 00:00 20Mb 7946 seqs, 4749 uniques, 4355 singletons (91.7%) 00:00 20Mb Min size 1, median 1, max 682, avg 1.67 00:00 20Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ4G_derep.fa 00:00 20Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ4G_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ4G_derep.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ4G_derep.fa 00:00 7.0Mb Getting sizes 00:00 7.0Mb Sorting 394 sequences 00:00 7.0Mb 0.3% Writing output 00:00 7.0Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 45Mb 100.0% 27 OTUs, 0 chimeras (0.0%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ4G_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ4G_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:01 50Mb 44.9% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:01 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:01 25Mb 0.1% Masking 00:01 25Mb 100.0% Masking 00:01 26Mb 0.1% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 6.7% Build index 00:03 82Mb 87.4% Build index 00:03 82Mb 100.0% Build index 00:03 93Mb 3.6% Search 0/1 chimeras found (0.0%) 00:03 96Mb 100.0% Search 1/27 chimeras found (3.7%) 00:03 96Mb 3.7% Writing 26 non-chimeras 00:03 96Mb 100.0% Writing 26 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ4G_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ4G_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching CSM5FZ4G_join.fq, 0.0% matched 00:00 54Mb 100.0% Searching CSM5FZ4G_join.fq, 65.2% matched 00:00 3.3Mb 0.0% Rows 00:01 26Mb 3.8% Rows 00:02 463Mb 84.7% Rows 00:02 532Mb 100.0% Rows 00:02 532Mb Reading pointers...done. 00:02 534Mb Reading seqs...done. 00:04 709Mb 0.1% Searching CSM5FZ4G_nonchimeric.fa, 0.0% matched 00:04 727Mb 100.0% Searching CSM5FZ4G_nonchimeric.fa, 96.2% matched Total reads: 182925 Total joined: 13340 Average join len: 16.52 Stdev join len: 2.24 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 62.8% passed 13340 FASTQ recs (13.3k) 8376 Converted (8376, 62.8%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ4G_truncated.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ4G_truncated.fa 00:00 20Mb 7946 seqs, 4749 uniques, 4355 singletons (91.7%) 00:00 20Mb Min size 1, median 1, max 682, avg 1.67 00:00 20Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ4G_derep.fa 00:00 20Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ4G_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ4G_derep.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ4G_derep.fa 00:00 7.0Mb Getting sizes 00:00 7.0Mb Sorting 394 sequences 00:00 7.0Mb 0.3% Writing output 00:00 7.0Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 27 OTUs, 0 chimeras (0.0%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ4G_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ4G_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:01 25Mb 73.4% Masking 00:01 25Mb 100.0% Masking 00:01 26Mb 0.1% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 50.4% Build index 00:02 82Mb 100.0% Build index 00:02 95Mb 3.6% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 1/27 chimeras found (3.7%) 00:02 96Mb 3.7% Writing 26 non-chimeras 00:02 96Mb 100.0% Writing 26 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ4G_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ4G_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching CSM5FZ4G_join.fq, 0.0% matched 00:00 54Mb 100.0% Searching CSM5FZ4G_join.fq, 65.2% matched 00:00 3.3Mb 0.0% Rows 00:01 227Mb 42.6% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching CSM5FZ4G_nonchimeric.fa, 0.0% matched 00:01 727Mb 100.0% Searching CSM5FZ4G_nonchimeric.fa, 96.2% matched Total reads: 182925 Total joined: 13340 Average join len: 16.52 Stdev join len: 2.24 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 62.8% passed 13340 FASTQ recs (13.3k) 8376 Converted (8376, 62.8%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ4G_truncated.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ4G_truncated.fa 00:00 20Mb 7946 seqs, 4749 uniques, 4355 singletons (91.7%) 00:00 20Mb Min size 1, median 1, max 682, avg 1.67 00:00 20Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ4G_derep.fa 00:00 20Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ4G_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ4G_derep.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ4G_derep.fa 00:00 7.0Mb Getting sizes 00:00 7.0Mb Sorting 394 sequences 00:00 7.0Mb 0.3% Writing output 00:00 7.0Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 27 OTUs, 0 chimeras (0.0%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ4G_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ4G_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:01 25Mb 93.6% Masking 00:01 25Mb 100.0% Masking 00:01 26Mb 0.1% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 10.3% Build index 00:02 82Mb 100.0% Build index 00:02 94Mb 3.6% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 1/27 chimeras found (3.7%) 00:02 96Mb 3.7% Writing 26 non-chimeras 00:02 96Mb 100.0% Writing 26 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ4G_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ4G_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching CSM5FZ4G_join.fq, 0.0% matched 00:01 54Mb 32.0% Searching CSM5FZ4G_join.fq, 69.6% matched 00:01 54Mb 100.0% Searching CSM5FZ4G_join.fq, 65.2% matched 00:00 3.3Mb 0.0% Rows 00:00 532Mb 100.0% Rows 00:00 532Mb Reading pointers...done. 00:00 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching CSM5FZ4G_nonchimeric.fa, 0.0% matched 00:01 727Mb 100.0% Searching CSM5FZ4G_nonchimeric.fa, 96.2% matched Total reads: 182925 Total joined: 13340 Average join len: 16.52 Stdev join len: 2.24 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 62.8% passed 13340 FASTQ recs (13.3k) 8376 Converted (8376, 62.8%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ4G_truncated.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ4G_truncated.fa 00:00 20Mb 7946 seqs, 4749 uniques, 4355 singletons (91.7%) 00:00 20Mb Min size 1, median 1, max 682, avg 1.67 00:00 20Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ4G_derep.fa 00:00 20Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ4G_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ4G_derep.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ4G_derep.fa 00:00 7.0Mb Getting sizes 00:00 7.0Mb Sorting 394 sequences 00:00 7.0Mb 0.3% Writing output 00:00 7.0Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 27 OTUs, 0 chimeras (0.0%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ4G_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ4G_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:01 25Mb 89.1% Masking 00:01 25Mb 100.0% Masking 00:01 26Mb 0.1% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 33.2% Build index 00:02 82Mb 100.0% Build index 00:02 95Mb 3.6% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 1/27 chimeras found (3.7%) 00:02 96Mb 3.7% Writing 26 non-chimeras 00:02 96Mb 100.0% Writing 26 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ4G_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5FZ4G_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching CSM5FZ4G_join.fq, 0.0% matched 00:01 54Mb 62.9% Searching CSM5FZ4G_join.fq, 69.4% matched 00:01 54Mb 100.0% Searching CSM5FZ4G_join.fq, 65.2% matched 00:00 3.3Mb 0.0% Rows 00:01 481Mb 88.6% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching CSM5FZ4G_nonchimeric.fa, 0.0% matched 00:01 727Mb 100.0% Searching CSM5FZ4G_nonchimeric.fa, 96.2% matched