Total reads: 164113 Total joined: 4392 Average join len: 11.81 Stdev join len: 5.48 00:00 47Mb 0.1% Filtering 00:01 48Mb 7.1% Filtering, 100.0% passed 00:01 15Mb 100.0% Filtering, 71.6% passed 4392 FASTQ recs (4392) 3143 Converted (3143, 71.6%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCU4_truncated.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCU4_truncated.fa 00:00 18Mb 2976 seqs, 2052 uniques, 1918 singletons (93.5%) 00:00 18Mb Min size 1, median 1, max 181, avg 1.45 00:00 18Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCU4_derep.fa 00:00 18Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCU4_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCU4_derep.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCU4_derep.fa 00:00 6.3Mb Getting sizes 00:00 6.3Mb Sorting 134 sequences 00:00 6.3Mb 0.7% Writing output 00:00 6.3Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 26 OTUs, 5 chimeras (3.7%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCU4_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCU4_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:01 26Mb 10.0% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 36.4% Build index 00:02 82Mb 100.0% Build index 00:02 93Mb 3.7% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 0/26 chimeras found (0.0%) 00:02 96Mb 3.8% Writing 26 non-chimeras 00:02 96Mb 100.0% Writing 26 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCU4_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCU4_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching CSM5MCU4_join.fq, 0.0% matched 00:01 54Mb 29.5% Searching CSM5MCU4_join.fq, 59.1% matched 00:01 54Mb 100.0% Searching CSM5MCU4_join.fq, 59.3% matched 00:00 3.3Mb 0.0% Rows 00:01 381Mb 67.8% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:02 709Mb 0.1% Searching CSM5MCU4_nonchimeric.fa, 0.0% matched 00:02 727Mb 100.0% Searching CSM5MCU4_nonchimeric.fa, 100.0% matched Total reads: 164113 Total joined: 4392 Average join len: 11.81 Stdev join len: 5.48 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 71.6% passed 4392 FASTQ recs (4392) 3143 Converted (3143, 71.6%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCU4_truncated.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCU4_truncated.fa 00:00 18Mb 2976 seqs, 2052 uniques, 1918 singletons (93.5%) 00:00 18Mb Min size 1, median 1, max 181, avg 1.45 00:00 18Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCU4_derep.fa 00:00 18Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCU4_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCU4_derep.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCU4_derep.fa 00:00 6.3Mb Getting sizes 00:00 6.3Mb Sorting 134 sequences 00:00 6.3Mb 0.7% Writing output 00:00 6.3Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 26 OTUs, 5 chimeras (3.7%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCU4_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCU4_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:01 26Mb 50.7% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 75.2% Build index 00:02 82Mb 100.0% Build index 00:02 95Mb 3.7% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 0/26 chimeras found (0.0%) 00:02 96Mb 3.8% Writing 26 non-chimeras 00:02 96Mb 100.0% Writing 26 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCU4_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCU4_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching CSM5MCU4_join.fq, 0.0% matched 00:00 55Mb 100.0% Searching CSM5MCU4_join.fq, 59.3% matched 00:00 3.3Mb 0.0% Rows 00:00 532Mb 100.0% Rows 00:00 532Mb Reading pointers...done. 00:00 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching CSM5MCU4_nonchimeric.fa, 0.0% matched 00:01 727Mb 100.0% Searching CSM5MCU4_nonchimeric.fa, 100.0% matched Total reads: 164113 Total joined: 4392 Average join len: 11.81 Stdev join len: 5.48 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 71.6% passed 4392 FASTQ recs (4392) 3143 Converted (3143, 71.6%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCU4_truncated.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCU4_truncated.fa 00:00 18Mb 2976 seqs, 2052 uniques, 1918 singletons (93.5%) 00:00 18Mb Min size 1, median 1, max 181, avg 1.45 00:00 18Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCU4_derep.fa 00:00 18Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCU4_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCU4_derep.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCU4_derep.fa 00:00 6.3Mb Getting sizes 00:00 6.3Mb Sorting 134 sequences 00:00 6.3Mb 0.7% Writing output 00:00 6.3Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 26 OTUs, 5 chimeras (3.7%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCU4_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCU4_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:01 26Mb 70.7% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 89.7% Build index 00:02 82Mb 100.0% Build index 00:02 94Mb 3.7% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 0/26 chimeras found (0.0%) 00:02 96Mb 3.8% Writing 26 non-chimeras 00:02 96Mb 100.0% Writing 26 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCU4_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCU4_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching CSM5MCU4_join.fq, 0.0% matched 00:00 54Mb 100.0% Searching CSM5MCU4_join.fq, 59.3% matched 00:00 3.3Mb 0.0% Rows 00:00 532Mb 100.0% Rows 00:00 532Mb Reading pointers...done. 00:00 534Mb Reading seqs...done. 00:00 709Mb 0.1% Searching CSM5MCU4_nonchimeric.fa, 0.0% matched 00:00 727Mb 100.0% Searching CSM5MCU4_nonchimeric.fa, 100.0% matched Total reads: 164113 Total joined: 4392 Average join len: 11.81 Stdev join len: 5.48 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 71.6% passed 4392 FASTQ recs (4392) 3143 Converted (3143, 71.6%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCU4_truncated.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCU4_truncated.fa 00:00 18Mb 2976 seqs, 2052 uniques, 1918 singletons (93.5%) 00:00 18Mb Min size 1, median 1, max 181, avg 1.45 00:00 18Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCU4_derep.fa 00:00 18Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCU4_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCU4_derep.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCU4_derep.fa 00:00 6.3Mb Getting sizes 00:00 6.3Mb Sorting 134 sequences 00:00 6.3Mb 0.7% Writing output 00:00 6.3Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 25 OTUs, 5 chimeras (3.7%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCU4_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCU4_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:01 25Mb 64.9% Masking 00:01 25Mb 100.0% Masking 00:01 26Mb 0.1% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 32.4% Build index 00:02 82Mb 100.0% Build index 00:02 94Mb 3.8% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 0/25 chimeras found (0.0%) 00:02 96Mb 4.0% Writing 25 non-chimeras 00:02 96Mb 100.0% Writing 25 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCU4_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCU4_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching CSM5MCU4_join.fq, 0.0% matched 00:00 54Mb 100.0% Searching CSM5MCU4_join.fq, 59.1% matched 00:00 3.3Mb 0.0% Rows 00:01 12Mb 1.6% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching CSM5MCU4_nonchimeric.fa, 0.0% matched 00:02 727Mb 16.5% Searching CSM5MCU4_nonchimeric.fa, 100.0% matched 00:02 727Mb 100.0% Searching CSM5MCU4_nonchimeric.fa, 100.0% matched