Total reads: 289404 Total joined: 25920 Average join len: 14.29 Stdev join len: 4.76 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 67.8% passed 25920 FASTQ recs (25.9k) 17584 Converted (17.6k, 67.8%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCUI_truncated.fa 00:00 43Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCUI_truncated.fa 00:00 22Mb 16686 seqs, 8340 uniques, 7635 singletons (91.5%) 00:00 22Mb Min size 1, median 1, max 1941, avg 2.00 00:00 22Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCUI_derep.fa 00:00 22Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCUI_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCUI_derep.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCUI_derep.fa 00:00 7.7Mb Getting sizes 00:00 7.7Mb Sorting 705 sequences 00:00 7.7Mb 0.1% Writing output 00:00 7.7Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 57 OTUs, 1 chimeras (0.1%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCUI_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCUI_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:01 50Mb 48.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:01 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:01 25Mb 0.1% Masking 00:01 25Mb 100.0% Masking 00:01 26Mb 0.1% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 3.5% Build index 00:03 82Mb 90.1% Build index 00:03 82Mb 100.0% Build index 00:03 95Mb 1.7% Search 0/1 chimeras found (0.0%) 00:03 96Mb 100.0% Search 0/57 chimeras found (0.0%) 00:03 96Mb 1.8% Writing 57 non-chimeras 00:03 96Mb 100.0% Writing 57 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCUI_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCUI_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching CSM5MCUI_join.fq, 0.0% matched 00:01 54Mb 83.7% Searching CSM5MCUI_join.fq, 70.1% matched 00:01 54Mb 100.0% Searching CSM5MCUI_join.fq, 71.2% matched 00:00 3.3Mb 0.0% Rows 00:01 420Mb 74.3% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching CSM5MCUI_nonchimeric.fa, 0.0% matched 00:01 728Mb 100.0% Searching CSM5MCUI_nonchimeric.fa, 94.7% matched Total reads: 289404 Total joined: 25920 Average join len: 14.29 Stdev join len: 4.76 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 67.8% passed 25920 FASTQ recs (25.9k) 17584 Converted (17.6k, 67.8%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCUI_truncated.fa 00:00 43Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCUI_truncated.fa 00:00 22Mb 16686 seqs, 8340 uniques, 7635 singletons (91.5%) 00:00 22Mb Min size 1, median 1, max 1941, avg 2.00 00:00 22Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCUI_derep.fa 00:00 22Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCUI_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCUI_derep.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCUI_derep.fa 00:00 7.7Mb Getting sizes 00:00 7.7Mb Sorting 705 sequences 00:00 7.7Mb 0.1% Writing output 00:00 7.7Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 56 OTUs, 1 chimeras (0.1%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCUI_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCUI_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:01 25Mb 29.0% Masking 00:01 25Mb 100.0% Masking 00:01 26Mb 0.1% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 35.9% Build index 00:02 82Mb 100.0% Build index 00:02 93Mb 1.8% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 0/56 chimeras found (0.0%) 00:02 96Mb 1.8% Writing 56 non-chimeras 00:02 96Mb 100.0% Writing 56 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCUI_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCUI_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching CSM5MCUI_join.fq, 0.0% matched 00:01 54Mb 31.3% Searching CSM5MCUI_join.fq, 73.1% matched 00:01 54Mb 100.0% Searching CSM5MCUI_join.fq, 71.2% matched 00:00 3.3Mb 0.0% Rows 00:01 214Mb 40.8% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching CSM5MCUI_nonchimeric.fa, 0.0% matched 00:01 728Mb 100.0% Searching CSM5MCUI_nonchimeric.fa, 94.6% matched Total reads: 289404 Total joined: 25920 Average join len: 14.29 Stdev join len: 4.76 00:00 47Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 67.8% passed 25920 FASTQ recs (25.9k) 17584 Converted (17.6k, 67.8%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCUI_truncated.fa 00:00 43Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCUI_truncated.fa 00:00 22Mb 16686 seqs, 8340 uniques, 7635 singletons (91.5%) 00:00 22Mb Min size 1, median 1, max 1941, avg 2.00 00:00 22Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCUI_derep.fa 00:00 22Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCUI_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCUI_derep.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCUI_derep.fa 00:00 7.7Mb Getting sizes 00:00 7.7Mb Sorting 705 sequences 00:00 7.7Mb 0.1% Writing output 00:00 7.7Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 56 OTUs, 1 chimeras (0.1%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCUI_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCUI_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:01 55Mb 77.3% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:01 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:01 25Mb 0.1% Masking 00:01 25Mb 100.0% Masking 00:01 26Mb 0.1% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 14.7% Build index 00:02 82Mb 100.0% Build index 00:02 93Mb 1.8% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 0/56 chimeras found (0.0%) 00:02 96Mb 1.8% Writing 56 non-chimeras 00:02 96Mb 100.0% Writing 56 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCUI_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCUI_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching CSM5MCUI_join.fq, 0.0% matched 00:01 53Mb 0.5% Searching CSM5MCUI_join.fq, 84.3% matched 00:02 55Mb 73.5% Searching CSM5MCUI_join.fq, 73.1% matched 00:02 55Mb 100.0% Searching CSM5MCUI_join.fq, 71.2% matched 00:00 3.3Mb 0.0% Rows 00:01 515Mb 94.6% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching CSM5MCUI_nonchimeric.fa, 0.0% matched 00:01 728Mb 100.0% Searching CSM5MCUI_nonchimeric.fa, 94.6% matched Total reads: 289404 Total joined: 25920 Average join len: 14.29 Stdev join len: 4.76 00:00 47Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 67.8% passed 25920 FASTQ recs (25.9k) 17584 Converted (17.6k, 67.8%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCUI_truncated.fa 00:00 43Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCUI_truncated.fa 00:00 22Mb 16686 seqs, 8340 uniques, 7635 singletons (91.5%) 00:00 22Mb Min size 1, median 1, max 1941, avg 2.00 00:00 22Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCUI_derep.fa 00:00 22Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCUI_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCUI_derep.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCUI_derep.fa 00:00 7.7Mb Getting sizes 00:00 7.7Mb Sorting 705 sequences 00:00 7.7Mb 0.1% Writing output 00:00 7.7Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 56 OTUs, 1 chimeras (0.1%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCUI_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCUI_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:01 25Mb 84.2% Masking 00:01 25Mb 100.0% Masking 00:01 26Mb 0.1% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 34.9% Build index 00:02 82Mb 100.0% Build index 00:02 93Mb 1.8% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 0/56 chimeras found (0.0%) 00:02 96Mb 1.8% Writing 56 non-chimeras 00:02 96Mb 100.0% Writing 56 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCUI_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCUI_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching CSM5MCUI_join.fq, 0.0% matched 00:01 54Mb 4.6% Searching CSM5MCUI_join.fq, 84.2% matched 00:02 55Mb 67.6% Searching CSM5MCUI_join.fq, 72.8% matched 00:02 55Mb 100.0% Searching CSM5MCUI_join.fq, 71.3% matched 00:00 3.3Mb 0.0% Rows 00:01 197Mb 37.7% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:02 709Mb 0.1% Searching CSM5MCUI_nonchimeric.fa, 0.0% matched 00:02 728Mb 100.0% Searching CSM5MCUI_nonchimeric.fa, 94.6% matched