Total reads: 5233 Total joined: 1158 Average join len: 6.54 Stdev join len: 2.38 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 98.3% passed 1158 FASTQ recs (1158) 1138 Converted (1138, 98.3%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV1_truncated.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV1_truncated.fa 00:00 18Mb 1080 seqs, 473 uniques, 440 singletons (93.0%) 00:00 18Mb Min size 1, median 1, max 302, avg 2.28 00:00 18Mb 0.2% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV1_derep.fa 00:00 18Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV1_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV1_derep.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV1_derep.fa 00:00 6.1Mb Getting sizes 00:00 6.1Mb Sorting 33 sequences 00:00 6.1Mb 3.0% Writing output 00:00 6.1Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 45Mb 100.0% 7 OTUs, 0 chimeras (0.0%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV1_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV1_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:01 25Mb 2.1% Masking 00:01 25Mb 100.0% Masking 00:01 26Mb 0.1% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 7.7% Build index 00:03 82Mb 83.9% Build index 00:03 82Mb 100.0% Build index 00:03 95Mb 12.5% Search 0/1 chimeras found (0.0%) 00:03 96Mb 100.0% Search 0/7 chimeras found (0.0%) 00:03 96Mb 14.3% Writing 7 non-chimeras 00:03 96Mb 100.0% Writing 7 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV1_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV1_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching CSM5MCV1_join.fq, 0.0% matched 00:00 54Mb 100.0% Searching CSM5MCV1_join.fq, 76.0% matched 00:00 3.3Mb 0.0% Rows 00:01 282Mb 53.4% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:02 709Mb 0.1% Searching CSM5MCV1_nonchimeric.fa, 0.0% matched 00:02 727Mb 100.0% Searching CSM5MCV1_nonchimeric.fa, 100.0% matched Total reads: 5233 Total joined: 1158 Average join len: 6.54 Stdev join len: 2.38 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 98.3% passed 1158 FASTQ recs (1158) 1138 Converted (1138, 98.3%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV1_truncated.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV1_truncated.fa 00:00 18Mb 1080 seqs, 473 uniques, 440 singletons (93.0%) 00:00 18Mb Min size 1, median 1, max 302, avg 2.28 00:00 18Mb 0.2% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV1_derep.fa 00:00 18Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV1_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV1_derep.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV1_derep.fa 00:00 6.1Mb Getting sizes 00:00 6.1Mb Sorting 33 sequences 00:00 6.1Mb 3.0% Writing output 00:00 6.1Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 45Mb 100.0% 7 OTUs, 0 chimeras (0.0%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV1_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV1_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:01 26Mb 72.2% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 83.6% Build index 00:02 82Mb 100.0% Build index 00:02 94Mb 12.5% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 0/7 chimeras found (0.0%) 00:02 96Mb 14.3% Writing 7 non-chimeras 00:02 96Mb 100.0% Writing 7 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV1_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV1_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching CSM5MCV1_join.fq, 0.0% matched 00:00 54Mb 100.0% Searching CSM5MCV1_join.fq, 76.1% matched 00:00 3.3Mb 0.0% Rows 00:00 532Mb 100.0% Rows 00:00 532Mb Reading pointers...done. 00:00 534Mb Reading seqs...done. 00:00 709Mb 0.1% Searching CSM5MCV1_nonchimeric.fa, 0.0% matched 00:00 727Mb 100.0% Searching CSM5MCV1_nonchimeric.fa, 100.0% matched Total reads: 5233 Total joined: 1158 Average join len: 6.54 Stdev join len: 2.38 00:00 47Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 98.3% passed 1158 FASTQ recs (1158) 1138 Converted (1138, 98.3%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV1_truncated.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV1_truncated.fa 00:00 18Mb 1080 seqs, 473 uniques, 440 singletons (93.0%) 00:00 18Mb Min size 1, median 1, max 302, avg 2.28 00:00 18Mb 0.2% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV1_derep.fa 00:00 18Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV1_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV1_derep.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV1_derep.fa 00:00 6.1Mb Getting sizes 00:00 6.1Mb Sorting 33 sequences 00:00 6.1Mb 3.0% Writing output 00:00 6.1Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 45Mb 100.0% 7 OTUs, 0 chimeras (0.0%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV1_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV1_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:01 25Mb 2.3% Masking 00:01 25Mb 100.0% Masking 00:01 26Mb 0.1% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 21.9% Build index 00:02 82Mb 100.0% Build index 00:02 93Mb 12.5% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 0/7 chimeras found (0.0%) 00:02 96Mb 14.3% Writing 7 non-chimeras 00:02 96Mb 100.0% Writing 7 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV1_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV1_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching CSM5MCV1_join.fq, 0.0% matched 00:00 54Mb 100.0% Searching CSM5MCV1_join.fq, 76.0% matched 00:00 3.3Mb 0.0% Rows 00:01 71Mb 11.9% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching CSM5MCV1_nonchimeric.fa, 0.0% matched 00:01 727Mb 100.0% Searching CSM5MCV1_nonchimeric.fa, 100.0% matched Total reads: 5233 Total joined: 1158 Average join len: 6.54 Stdev join len: 2.38 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 98.3% passed 1158 FASTQ recs (1158) 1138 Converted (1138, 98.3%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV1_truncated.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV1_truncated.fa 00:00 18Mb 1080 seqs, 473 uniques, 440 singletons (93.0%) 00:00 18Mb Min size 1, median 1, max 302, avg 2.28 00:00 18Mb 0.2% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV1_derep.fa 00:00 18Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV1_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV1_derep.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV1_derep.fa 00:00 6.1Mb Getting sizes 00:00 6.1Mb Sorting 33 sequences 00:00 6.1Mb 3.0% Writing output 00:00 6.1Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 45Mb 100.0% 7 OTUs, 0 chimeras (0.0%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV1_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV1_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:01 26Mb 57.4% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 67.8% Build index 00:02 82Mb 100.0% Build index 00:02 93Mb 12.5% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 0/7 chimeras found (0.0%) 00:02 96Mb 14.3% Writing 7 non-chimeras 00:02 96Mb 100.0% Writing 7 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV1_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV1_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching CSM5MCV1_join.fq, 0.0% matched 00:00 54Mb 100.0% Searching CSM5MCV1_join.fq, 76.0% matched 00:00 3.3Mb 0.0% Rows 00:01 294Mb 55.1% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching CSM5MCV1_nonchimeric.fa, 0.0% matched 00:01 727Mb 100.0% Searching CSM5MCV1_nonchimeric.fa, 100.0% matched