Total reads: 270014 Total joined: 12151 Average join len: 6.90 Stdev join len: 3.01 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 78.4% passed 12151 FASTQ recs (12.2k) 9524 Converted (9524, 78.4%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV3_truncated.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV3_truncated.fa 00:00 20Mb 9043 seqs, 6279 uniques, 5949 singletons (94.7%) 00:00 20Mb Min size 1, median 1, max 464, avg 1.44 00:00 20Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV3_derep.fa 00:00 20Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV3_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV3_derep.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV3_derep.fa 00:00 7.2Mb Getting sizes 00:00 7.2Mb Sorting 330 sequences 00:00 7.2Mb 0.3% Writing output 00:00 7.2Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 45Mb 100.0% 23 OTUs, 0 chimeras (0.0%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV3_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV3_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:01 25Mb 10.3% Masking 00:01 25Mb 100.0% Masking 00:01 26Mb 0.1% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 18.0% Build index 00:02 82Mb 100.0% Build index 00:02 93Mb 4.2% Search 0/1 chimeras found (0.0%) 00:02 97Mb 100.0% Search 0/23 chimeras found (0.0%) 00:02 97Mb 4.3% Writing 23 non-chimeras 00:02 97Mb 100.0% Writing 23 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV3_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV3_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching CSM5MCV3_join.fq, 0.0% matched 00:00 54Mb 100.0% Searching CSM5MCV3_join.fq, 55.0% matched 00:00 3.3Mb 0.0% Rows 00:01 203Mb 38.9% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:02 709Mb 0.1% Searching CSM5MCV3_nonchimeric.fa, 0.0% matched 00:02 727Mb 100.0% Searching CSM5MCV3_nonchimeric.fa, 87.0% matched Total reads: 270014 Total joined: 12151 Average join len: 6.90 Stdev join len: 3.01 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 78.4% passed 12151 FASTQ recs (12.2k) 9524 Converted (9524, 78.4%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV3_truncated.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV3_truncated.fa 00:00 20Mb 9043 seqs, 6279 uniques, 5949 singletons (94.7%) 00:00 20Mb Min size 1, median 1, max 464, avg 1.44 00:00 20Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV3_derep.fa 00:00 20Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV3_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV3_derep.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV3_derep.fa 00:00 7.2Mb Getting sizes 00:00 7.2Mb Sorting 330 sequences 00:00 7.2Mb 0.3% Writing output 00:00 7.2Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 45Mb 100.0% 23 OTUs, 0 chimeras (0.0%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV3_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV3_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:01 26Mb 34.4% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 77.9% Build index 00:02 82Mb 100.0% Build index 00:02 93Mb 4.2% Search 0/1 chimeras found (0.0%) 00:02 97Mb 100.0% Search 0/23 chimeras found (0.0%) 00:02 97Mb 4.3% Writing 23 non-chimeras 00:02 97Mb 100.0% Writing 23 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV3_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV3_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching CSM5MCV3_join.fq, 0.0% matched 00:00 54Mb 100.0% Searching CSM5MCV3_join.fq, 55.0% matched 00:00 3.3Mb 0.0% Rows 00:01 244Mb 46.5% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching CSM5MCV3_nonchimeric.fa, 0.0% matched 00:01 727Mb 100.0% Searching CSM5MCV3_nonchimeric.fa, 87.0% matched Total reads: 270014 Total joined: 12151 Average join len: 6.90 Stdev join len: 3.01 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 78.4% passed 12151 FASTQ recs (12.2k) 9524 Converted (9524, 78.4%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV3_truncated.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV3_truncated.fa 00:00 20Mb 9043 seqs, 6279 uniques, 5949 singletons (94.7%) 00:00 20Mb Min size 1, median 1, max 464, avg 1.44 00:00 20Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV3_derep.fa 00:00 20Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV3_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV3_derep.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV3_derep.fa 00:00 7.2Mb Getting sizes 00:00 7.2Mb Sorting 330 sequences 00:00 7.2Mb 0.3% Writing output 00:00 7.2Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 45Mb 100.0% 23 OTUs, 0 chimeras (0.0%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV3_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV3_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:01 26Mb 47.7% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 76.5% Build index 00:02 82Mb 100.0% Build index 00:02 93Mb 4.2% Search 0/1 chimeras found (0.0%) 00:02 97Mb 100.0% Search 0/23 chimeras found (0.0%) 00:02 97Mb 4.3% Writing 23 non-chimeras 00:02 97Mb 100.0% Writing 23 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV3_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV3_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching CSM5MCV3_join.fq, 0.0% matched 00:00 54Mb 100.0% Searching CSM5MCV3_join.fq, 55.0% matched 00:00 3.3Mb 0.0% Rows 00:01 472Mb 87.1% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching CSM5MCV3_nonchimeric.fa, 0.0% matched 00:01 727Mb 100.0% Searching CSM5MCV3_nonchimeric.fa, 87.0% matched Total reads: 270014 Total joined: 12151 Average join len: 6.90 Stdev join len: 3.01 00:00 47Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 78.4% passed 12151 FASTQ recs (12.2k) 9524 Converted (9524, 78.4%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV3_truncated.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV3_truncated.fa 00:00 20Mb 9043 seqs, 6279 uniques, 5949 singletons (94.7%) 00:00 20Mb Min size 1, median 1, max 464, avg 1.44 00:00 20Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV3_derep.fa 00:00 20Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV3_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV3_derep.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV3_derep.fa 00:00 7.2Mb Getting sizes 00:00 7.2Mb Sorting 330 sequences 00:00 7.2Mb 0.3% Writing output 00:00 7.2Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 45Mb 100.0% 23 OTUs, 0 chimeras (0.0%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV3_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV3_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:01 25Mb 27.4% Masking 00:01 25Mb 100.0% Masking 00:01 26Mb 0.1% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 10.1% Build index 00:03 82Mb 86.7% Build index 00:03 82Mb 100.0% Build index 00:03 93Mb 4.2% Search 0/1 chimeras found (0.0%) 00:03 97Mb 100.0% Search 0/23 chimeras found (0.0%) 00:03 97Mb 4.3% Writing 23 non-chimeras 00:03 97Mb 100.0% Writing 23 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV3_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV3_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching CSM5MCV3_join.fq, 0.0% matched 00:00 54Mb 100.0% Searching CSM5MCV3_join.fq, 55.0% matched 00:00 3.3Mb 0.0% Rows 00:01 135Mb 24.2% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:02 709Mb 0.1% Searching CSM5MCV3_nonchimeric.fa, 0.0% matched 00:02 727Mb 100.0% Searching CSM5MCV3_nonchimeric.fa, 87.0% matched