Total reads: 217869 Total joined: 30283 Average join len: 6.45 Stdev join len: 2.18 00:00 48Mb 0.1% Filtering 00:01 48Mb 46.0% Filtering, 100.0% passed 00:01 15Mb 100.0% Filtering, 78.0% passed 30283 FASTQ recs (30.3k) 23620 Converted (23.6k, 78.0%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV5_truncated.fa 00:00 44Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV5_truncated.fa 00:00 24Mb 22398 seqs, 12755 uniques, 11768 singletons (92.3%) 00:00 24Mb Min size 1, median 1, max 1464, avg 1.76 00:00 24Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV5_derep.fa 00:00 24Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV5_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV5_derep.fa 00:00 42Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV5_derep.fa 00:00 8.8Mb Getting sizes 00:00 8.8Mb Sorting 987 sequences 00:00 8.8Mb 0.1% Writing output 00:00 8.8Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 34 OTUs, 0 chimeras (0.0%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV5_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV5_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:01 47Mb 29.4% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:01 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:01 25Mb 0.1% Masking 00:01 25Mb 100.0% Masking 00:01 26Mb 0.1% Word stats 00:02 26Mb 94.4% Word stats 00:02 26Mb 100.0% Word stats 00:02 26Mb 100.0% Alloc rows 00:02 82Mb 0.1% Build index 00:03 82Mb 84.1% Build index 00:03 82Mb 100.0% Build index 00:03 93Mb 2.9% Search 0/1 chimeras found (0.0%) 00:03 96Mb 100.0% Search 0/34 chimeras found (0.0%) 00:03 96Mb 2.9% Writing 34 non-chimeras 00:03 96Mb 100.0% Writing 34 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV5_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV5_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching CSM5MCV5_join.fq, 0.0% matched 00:01 54Mb 76.7% Searching CSM5MCV5_join.fq, 67.3% matched 00:01 54Mb 100.0% Searching CSM5MCV5_join.fq, 67.2% matched 00:00 3.3Mb 0.0% Rows 00:01 371Mb 66.4% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:02 709Mb 0.1% Searching CSM5MCV5_nonchimeric.fa, 0.0% matched 00:02 727Mb 100.0% Searching CSM5MCV5_nonchimeric.fa, 70.6% matched Total reads: 217869 Total joined: 30283 Average join len: 6.45 Stdev join len: 2.18 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 78.0% passed 30283 FASTQ recs (30.3k) 23620 Converted (23.6k, 78.0%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV5_truncated.fa 00:00 44Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV5_truncated.fa 00:00 24Mb 22398 seqs, 12755 uniques, 11768 singletons (92.3%) 00:00 24Mb Min size 1, median 1, max 1464, avg 1.76 00:00 24Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV5_derep.fa 00:00 24Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV5_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV5_derep.fa 00:00 42Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV5_derep.fa 00:00 8.8Mb Getting sizes 00:00 8.8Mb Sorting 987 sequences 00:00 8.8Mb 0.1% Writing output 00:00 8.8Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 34 OTUs, 0 chimeras (0.0%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV5_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV5_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:01 26Mb 5.4% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 64.9% Build index 00:02 82Mb 100.0% Build index 00:02 94Mb 2.9% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 0/34 chimeras found (0.0%) 00:02 96Mb 2.9% Writing 34 non-chimeras 00:02 96Mb 100.0% Writing 34 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV5_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV5_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching CSM5MCV5_join.fq, 0.0% matched 00:01 54Mb 71.5% Searching CSM5MCV5_join.fq, 67.8% matched 00:01 54Mb 100.0% Searching CSM5MCV5_join.fq, 67.2% matched 00:00 3.3Mb 0.0% Rows 00:00 532Mb 100.0% Rows 00:00 532Mb Reading pointers...done. 00:00 534Mb Reading seqs...done. 00:00 709Mb 0.1% Searching CSM5MCV5_nonchimeric.fa, 0.0% matched 00:00 727Mb 100.0% Searching CSM5MCV5_nonchimeric.fa, 70.6% matched Total reads: 217869 Total joined: 30283 Average join len: 6.45 Stdev join len: 2.18 00:00 47Mb 0.1% Filtering 00:01 15Mb 100.0% Filtering, 78.0% passed 30283 FASTQ recs (30.3k) 23620 Converted (23.6k, 78.0%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV5_truncated.fa 00:00 44Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV5_truncated.fa 00:00 24Mb 22398 seqs, 12755 uniques, 11768 singletons (92.3%) 00:00 24Mb Min size 1, median 1, max 1464, avg 1.76 00:00 24Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV5_derep.fa 00:00 24Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV5_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV5_derep.fa 00:00 42Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV5_derep.fa 00:00 8.8Mb Getting sizes 00:00 8.8Mb Sorting 987 sequences 00:00 8.8Mb 0.1% Writing output 00:00 8.8Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 34 OTUs, 0 chimeras (0.0%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV5_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV5_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:01 25Mb 55.3% Masking 00:01 25Mb 100.0% Masking 00:01 26Mb 0.1% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 38.9% Build index 00:02 82Mb 100.0% Build index 00:02 93Mb 2.9% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 0/34 chimeras found (0.0%) 00:02 96Mb 2.9% Writing 34 non-chimeras 00:02 96Mb 100.0% Writing 34 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV5_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV5_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching CSM5MCV5_join.fq, 0.0% matched 00:01 54Mb 21.0% Searching CSM5MCV5_join.fq, 65.8% matched 00:02 54Mb 90.8% Searching CSM5MCV5_join.fq, 66.4% matched 00:02 54Mb 100.0% Searching CSM5MCV5_join.fq, 67.3% matched 00:00 3.3Mb 0.0% Rows 00:00 532Mb 100.0% Rows 00:00 532Mb Reading pointers...done. 00:00 534Mb Reading seqs...done. 00:00 709Mb 0.1% Searching CSM5MCV5_nonchimeric.fa, 0.0% matched 00:00 727Mb 100.0% Searching CSM5MCV5_nonchimeric.fa, 70.6% matched Total reads: 217869 Total joined: 30283 Average join len: 6.45 Stdev join len: 2.18 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 78.0% passed 30283 FASTQ recs (30.3k) 23620 Converted (23.6k, 78.0%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV5_truncated.fa 00:00 44Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV5_truncated.fa 00:00 24Mb 22398 seqs, 12755 uniques, 11768 singletons (92.3%) 00:00 24Mb Min size 1, median 1, max 1464, avg 1.76 00:00 24Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV5_derep.fa 00:00 24Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV5_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV5_derep.fa 00:00 42Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV5_derep.fa 00:00 8.8Mb Getting sizes 00:00 8.8Mb Sorting 987 sequences 00:00 8.8Mb 0.1% Writing output 00:00 8.8Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 34 OTUs, 0 chimeras (0.0%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV5_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV5_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:01 25Mb 80.6% Masking 00:01 25Mb 100.0% Masking 00:01 26Mb 0.1% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 36.3% Build index 00:02 82Mb 100.0% Build index 00:02 95Mb 2.9% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 0/34 chimeras found (0.0%) 00:02 96Mb 2.9% Writing 34 non-chimeras 00:02 96Mb 100.0% Writing 34 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV5_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCV5_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching CSM5MCV5_join.fq, 0.0% matched 00:01 54Mb 23.0% Searching CSM5MCV5_join.fq, 64.3% matched 00:01 54Mb 100.0% Searching CSM5MCV5_join.fq, 67.3% matched 00:00 3.3Mb 0.0% Rows 00:01 153Mb 28.3% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:02 709Mb 0.1% Searching CSM5MCV5_nonchimeric.fa, 0.0% matched 00:02 727Mb 100.0% Searching CSM5MCV5_nonchimeric.fa, 70.6% matched