Total reads: 229879 Total joined: 54268 Average join len: 8.03 Stdev join len: 4.27 00:00 48Mb 0.1% Filtering 00:01 48Mb 0.2% Filtering, 0.0% passed 00:01 15Mb 100.0% Filtering, 75.9% passed 54268 FASTQ recs (54.3k) 41200 Converted (41.2k, 75.9%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVH_truncated.fa 00:01 37Mb 0.2% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVH_truncated.fa 00:01 47Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVH_truncated.fa 00:01 26Mb 39134 seqs, 25208 uniques, 23683 singletons (94.0%) 00:01 26Mb Min size 1, median 1, max 2018, avg 1.55 00:01 26Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVH_derep.fa 00:01 26Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVH_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVH_derep.fa 00:00 44Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVH_derep.fa 00:00 11Mb Getting sizes 00:00 11Mb Sorting 1525 sequences 00:00 11Mb 0.1% Writing output 00:00 11Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 33 OTUs, 24 chimeras (1.6%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVH_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVH_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:01 25Mb 36.3% Masking 00:01 25Mb 100.0% Masking 00:01 26Mb 0.1% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 18.6% Build index 00:02 82Mb 100.0% Build index 00:02 95Mb 2.9% Search 0/1 chimeras found (0.0%) 00:03 96Mb 67.6% Search 1/23 chimeras found (4.3%) 00:03 96Mb 100.0% Search 1/33 chimeras found (3.0%) 00:03 96Mb 3.0% Writing 32 non-chimeras 00:03 96Mb 100.0% Writing 32 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVH_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVH_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching CSM5MCVH_join.fq, 0.0% matched 00:01 54Mb 57.5% Searching CSM5MCVH_join.fq, 62.0% matched 00:01 54Mb 100.0% Searching CSM5MCVH_join.fq, 57.3% matched 00:00 3.3Mb 0.0% Rows 00:01 128Mb 22.8% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:02 709Mb 0.1% Searching CSM5MCVH_nonchimeric.fa, 0.0% matched 00:02 727Mb 100.0% Searching CSM5MCVH_nonchimeric.fa, 59.4% matched Total reads: 229879 Total joined: 54268 Average join len: 8.03 Stdev join len: 4.27 00:00 47Mb 0.1% Filtering 00:01 48Mb 51.7% Filtering, 100.0% passed 00:01 15Mb 100.0% Filtering, 75.9% passed 54268 FASTQ recs (54.3k) 41200 Converted (41.2k, 75.9%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVH_truncated.fa 00:00 47Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVH_truncated.fa 00:00 26Mb 39134 seqs, 25208 uniques, 23683 singletons (94.0%) 00:00 26Mb Min size 1, median 1, max 2018, avg 1.55 00:00 26Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVH_derep.fa 00:00 26Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVH_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVH_derep.fa 00:00 44Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVH_derep.fa 00:00 11Mb Getting sizes 00:00 11Mb Sorting 1525 sequences 00:00 11Mb 0.1% Writing output 00:01 11Mb 31.6% Writing output 00:01 11Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 33 OTUs, 24 chimeras (1.6%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVH_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVH_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:01 26Mb 98.3% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:01 82Mb 100.0% Build index 00:01 93Mb 2.9% Search 0/1 chimeras found (0.0%) 00:01 96Mb 100.0% Search 1/33 chimeras found (3.0%) 00:01 96Mb 3.0% Writing 32 non-chimeras 00:01 96Mb 100.0% Writing 32 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVH_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVH_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:01 6.1Mb 0.2% Masking 00:01 6.1Mb 100.0% Masking 00:01 6.9Mb 0.1% Word stats 00:01 6.9Mb 100.0% Word stats 00:01 6.9Mb 100.0% Alloc rows 00:01 6.9Mb 0.1% Build index 00:01 6.9Mb 100.0% Build index 00:01 40Mb 0.1% Searching CSM5MCVH_join.fq, 0.0% matched 00:02 54Mb 38.0% Searching CSM5MCVH_join.fq, 57.0% matched 00:03 54Mb 81.3% Searching CSM5MCVH_join.fq, 58.0% matched 00:03 54Mb 100.0% Searching CSM5MCVH_join.fq, 57.5% matched 00:00 3.3Mb 0.0% Rows 00:00 532Mb 100.0% Rows 00:00 532Mb Reading pointers...done. 00:00 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching CSM5MCVH_nonchimeric.fa, 0.0% matched 00:01 727Mb 100.0% Searching CSM5MCVH_nonchimeric.fa, 59.4% matched Total reads: 229879 Total joined: 54268 Average join len: 8.03 Stdev join len: 4.27 00:00 48Mb 0.1% Filtering 00:01 48Mb 93.4% Filtering, 81.2% passed 00:01 15Mb 100.0% Filtering, 75.9% passed 54268 FASTQ recs (54.3k) 41200 Converted (41.2k, 75.9%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVH_truncated.fa 00:00 47Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVH_truncated.fa 00:00 26Mb 39134 seqs, 25208 uniques, 23683 singletons (94.0%) 00:00 26Mb Min size 1, median 1, max 2018, avg 1.55 00:00 26Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVH_derep.fa 00:00 26Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVH_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVH_derep.fa 00:00 44Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVH_derep.fa 00:01 11Mb Getting sizes 00:01 11Mb Sorting 1525 sequences 00:01 11Mb 0.1% Writing output 00:01 11Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 33 OTUs, 24 chimeras (1.6%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVH_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVH_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:01 26Mb 62.6% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 65.8% Build index 00:02 82Mb 100.0% Build index 00:02 94Mb 2.9% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 2/33 chimeras found (6.1%) 00:02 96Mb 3.0% Writing 31 non-chimeras 00:02 96Mb 100.0% Writing 31 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVH_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVH_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching CSM5MCVH_join.fq, 0.0% matched 00:01 54Mb 32.3% Searching CSM5MCVH_join.fq, 54.3% matched 00:01 54Mb 100.0% Searching CSM5MCVH_join.fq, 57.3% matched 00:00 3.3Mb 0.0% Rows 00:01 38Mb 5.3% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:02 709Mb 0.1% Searching CSM5MCVH_nonchimeric.fa, 0.0% matched 00:02 727Mb 100.0% Searching CSM5MCVH_nonchimeric.fa, 58.1% matched Total reads: 229879 Total joined: 54268 Average join len: 8.03 Stdev join len: 4.27 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 75.9% passed 54268 FASTQ recs (54.3k) 41200 Converted (41.2k, 75.9%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVH_truncated.fa 00:00 47Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVH_truncated.fa 00:01 26Mb 39134 seqs, 25208 uniques, 23683 singletons (94.0%) 00:01 26Mb Min size 1, median 1, max 2018, avg 1.55 00:01 26Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVH_derep.fa 00:01 26Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVH_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVH_derep.fa 00:00 44Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVH_derep.fa 00:00 11Mb Getting sizes 00:00 11Mb Sorting 1525 sequences 00:00 11Mb 0.1% Writing output 00:00 11Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 33 OTUs, 24 chimeras (1.6%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVH_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVH_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:01 26Mb 4.6% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 43.3% Build index 00:02 82Mb 100.0% Build index 00:02 95Mb 2.9% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 2/33 chimeras found (6.1%) 00:02 96Mb 3.0% Writing 31 non-chimeras 00:02 96Mb 100.0% Writing 31 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVH_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVH_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching CSM5MCVH_join.fq, 0.0% matched 00:01 54Mb 17.9% Searching CSM5MCVH_join.fq, 56.9% matched 00:02 54Mb 83.0% Searching CSM5MCVH_join.fq, 58.1% matched 00:02 54Mb 100.0% Searching CSM5MCVH_join.fq, 57.3% matched 00:00 3.3Mb 0.0% Rows 00:01 510Mb 93.4% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching CSM5MCVH_nonchimeric.fa, 0.0% matched 00:01 727Mb 100.0% Searching CSM5MCVH_nonchimeric.fa, 58.1% matched