Total reads: 201505 Total joined: 20305 Average join len: 8.58 Stdev join len: 4.66 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 76.7% passed 20305 FASTQ recs (20.3k) 15565 Converted (15.6k, 76.7%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVV_truncated.fa 00:00 43Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVV_truncated.fa 00:00 21Mb 14738 seqs, 8026 uniques, 7358 singletons (91.7%) 00:00 21Mb Min size 1, median 1, max 1405, avg 1.84 00:00 21Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVV_derep.fa 00:01 21Mb 66.1% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVV_derep.fa 00:01 21Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVV_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVV_derep.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVV_derep.fa 00:00 7.7Mb Getting sizes 00:00 7.7Mb Sorting 668 sequences 00:00 7.7Mb 0.1% Writing output 00:00 7.7Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 50 OTUs, 2 chimeras (0.3%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVV_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVV_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:01 26Mb 59.4% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 63.6% Build index 00:02 82Mb 100.0% Build index 00:02 94Mb 2.0% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 0/50 chimeras found (0.0%) 00:02 96Mb 2.0% Writing 50 non-chimeras 00:02 96Mb 100.0% Writing 50 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVV_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVV_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching CSM5MCVV_join.fq, 0.0% matched 00:01 55Mb 96.6% Searching CSM5MCVV_join.fq, 68.1% matched 00:01 55Mb 100.0% Searching CSM5MCVV_join.fq, 69.0% matched 00:00 3.3Mb 0.0% Rows 00:00 532Mb 100.0% Rows 00:00 532Mb Reading pointers...done. 00:00 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching CSM5MCVV_nonchimeric.fa, 0.0% matched 00:01 728Mb 100.0% Searching CSM5MCVV_nonchimeric.fa, 92.0% matched Total reads: 201505 Total joined: 20305 Average join len: 8.58 Stdev join len: 4.66 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 76.7% passed 20305 FASTQ recs (20.3k) 15565 Converted (15.6k, 76.7%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVV_truncated.fa 00:00 43Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVV_truncated.fa 00:00 21Mb 14738 seqs, 8026 uniques, 7358 singletons (91.7%) 00:00 21Mb Min size 1, median 1, max 1405, avg 1.84 00:00 21Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVV_derep.fa 00:00 21Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVV_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVV_derep.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVV_derep.fa 00:00 7.7Mb Getting sizes 00:00 7.7Mb Sorting 668 sequences 00:00 7.7Mb 0.1% Writing output 00:00 7.7Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 50 OTUs, 2 chimeras (0.3%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVV_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVV_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:01 26Mb 19.5% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 26.3% Build index 00:02 82Mb 100.0% Build index 00:02 94Mb 2.0% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 0/50 chimeras found (0.0%) 00:02 96Mb 2.0% Writing 50 non-chimeras 00:02 96Mb 100.0% Writing 50 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVV_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVV_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching CSM5MCVV_join.fq, 0.0% matched 00:01 54Mb 50.5% Searching CSM5MCVV_join.fq, 72.4% matched 00:01 54Mb 100.0% Searching CSM5MCVV_join.fq, 69.0% matched 00:00 3.3Mb 0.0% Rows 00:00 532Mb 100.0% Rows 00:00 532Mb Reading pointers...done. 00:00 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching CSM5MCVV_nonchimeric.fa, 0.0% matched 00:01 728Mb 100.0% Searching CSM5MCVV_nonchimeric.fa, 92.0% matched Total reads: 201505 Total joined: 20305 Average join len: 8.58 Stdev join len: 4.66 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 76.7% passed 20305 FASTQ recs (20.3k) 15565 Converted (15.6k, 76.7%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVV_truncated.fa 00:00 43Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVV_truncated.fa 00:00 21Mb 14738 seqs, 8026 uniques, 7358 singletons (91.7%) 00:00 21Mb Min size 1, median 1, max 1405, avg 1.84 00:00 21Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVV_derep.fa 00:00 21Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVV_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVV_derep.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVV_derep.fa 00:00 7.7Mb Getting sizes 00:00 7.7Mb Sorting 668 sequences 00:00 7.7Mb 0.1% Writing output 00:00 7.7Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 50 OTUs, 2 chimeras (0.3%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVV_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVV_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:01 26Mb 4.8% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 40.0% Build index 00:02 82Mb 100.0% Build index 00:02 94Mb 2.0% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 0/50 chimeras found (0.0%) 00:02 96Mb 2.0% Writing 50 non-chimeras 00:02 96Mb 100.0% Writing 50 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVV_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVV_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching CSM5MCVV_join.fq, 0.0% matched 00:01 54Mb 41.9% Searching CSM5MCVV_join.fq, 70.3% matched 00:01 54Mb 100.0% Searching CSM5MCVV_join.fq, 69.0% matched 00:00 3.3Mb 0.0% Rows 00:01 60Mb 10.1% Rows 00:02 222Mb 41.8% Rows 00:03 385Mb 68.2% Rows 00:03 532Mb 100.0% Rows 00:03 532Mb Reading pointers...done. 00:03 534Mb Reading seqs...done. 00:04 709Mb 0.1% Searching CSM5MCVV_nonchimeric.fa, 0.0% matched 00:04 728Mb 100.0% Searching CSM5MCVV_nonchimeric.fa, 92.0% matched Total reads: 201505 Total joined: 20305 Average join len: 8.58 Stdev join len: 4.66 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 76.7% passed 20305 FASTQ recs (20.3k) 15565 Converted (15.6k, 76.7%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVV_truncated.fa 00:00 43Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVV_truncated.fa 00:00 21Mb 14738 seqs, 8026 uniques, 7358 singletons (91.7%) 00:00 21Mb Min size 1, median 1, max 1405, avg 1.84 00:00 21Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVV_derep.fa 00:00 21Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVV_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVV_derep.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVV_derep.fa 00:00 7.7Mb Getting sizes 00:00 7.7Mb Sorting 668 sequences 00:00 7.7Mb 0.1% Writing output 00:00 7.7Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 50 OTUs, 2 chimeras (0.3%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVV_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVV_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:01 26Mb 21.9% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 51.3% Build index 00:02 82Mb 100.0% Build index 00:02 95Mb 2.0% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 0/50 chimeras found (0.0%) 00:02 96Mb 2.0% Writing 50 non-chimeras 00:02 96Mb 100.0% Writing 50 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVV_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/CSM5MCVV_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching CSM5MCVV_join.fq, 0.0% matched 00:01 55Mb 50.0% Searching CSM5MCVV_join.fq, 72.3% matched 00:01 55Mb 100.0% Searching CSM5MCVV_join.fq, 69.0% matched 00:00 3.3Mb 0.0% Rows 00:01 315Mb 58.5% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching CSM5MCVV_nonchimeric.fa, 0.0% matched 00:01 728Mb 100.0% Searching CSM5MCVV_nonchimeric.fa, 92.0% matched