Total reads: 44729 Total joined: 3318 Average join len: 9.82 Stdev join len: 5.25 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 72.6% passed 3318 FASTQ recs (3318) 2410 Converted (2410, 72.6%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4C_truncated.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4C_truncated.fa 00:00 18Mb 2285 seqs, 1930 uniques, 1813 singletons (93.9%) 00:00 18Mb Min size 1, median 1, max 36, avg 1.18 00:00 18Mb 0.1% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4C_derep.fa 00:00 18Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4C_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4C_derep.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4C_derep.fa 00:00 6.3Mb Getting sizes 00:00 6.3Mb Sorting 117 sequences 00:00 6.3Mb 0.9% Writing output 00:00 6.3Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 45 OTUs, 2 chimeras (1.7%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4C_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4C_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:01 56Mb 82.6% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:01 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:01 25Mb 0.1% Masking 00:01 25Mb 100.0% Masking 00:01 26Mb 0.1% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 10.4% Build index 00:03 82Mb 96.1% Build index 00:03 82Mb 100.0% Build index 00:03 95Mb 2.2% Search 0/1 chimeras found (0.0%) 00:03 96Mb 100.0% Search 0/45 chimeras found (0.0%) 00:03 96Mb 2.2% Writing 45 non-chimeras 00:03 96Mb 100.0% Writing 45 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4C_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4C_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching HSM5MD4C_join.fq, 0.0% matched 00:00 54Mb 100.0% Searching HSM5MD4C_join.fq, 45.6% matched 00:00 3.3Mb 0.0% Rows 00:01 258Mb 49.3% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:02 709Mb 0.1% Searching HSM5MD4C_nonchimeric.fa, 0.0% matched 00:02 728Mb 100.0% Searching HSM5MD4C_nonchimeric.fa, 100.0% matched Total reads: 44729 Total joined: 3318 Average join len: 9.82 Stdev join len: 5.25 00:00 47Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 72.6% passed 3318 FASTQ recs (3318) 2410 Converted (2410, 72.6%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4C_truncated.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4C_truncated.fa 00:00 18Mb 2285 seqs, 1930 uniques, 1813 singletons (93.9%) 00:00 18Mb Min size 1, median 1, max 36, avg 1.18 00:00 18Mb 0.1% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4C_derep.fa 00:00 18Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4C_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4C_derep.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4C_derep.fa 00:00 6.3Mb Getting sizes 00:00 6.3Mb Sorting 117 sequences 00:00 6.3Mb 0.9% Writing output 00:00 6.3Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 45 OTUs, 2 chimeras (1.7%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4C_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4C_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:01 56Mb 83.5% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:01 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:01 25Mb 0.1% Masking 00:01 25Mb 100.0% Masking 00:01 26Mb 0.1% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 15.7% Build index 00:02 82Mb 100.0% Build index 00:02 93Mb 2.2% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 0/45 chimeras found (0.0%) 00:02 96Mb 2.2% Writing 45 non-chimeras 00:02 96Mb 100.0% Writing 45 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4C_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4C_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching HSM5MD4C_join.fq, 0.0% matched 00:01 54Mb 45.6% Searching HSM5MD4C_join.fq, 50.4% matched 00:01 54Mb 100.0% Searching HSM5MD4C_join.fq, 45.6% matched 00:00 3.3Mb 0.0% Rows 00:00 532Mb 100.0% Rows 00:00 532Mb Reading pointers...done. 00:00 534Mb Reading seqs...done. 00:00 709Mb 0.1% Searching HSM5MD4C_nonchimeric.fa, 0.0% matched 00:00 727Mb 100.0% Searching HSM5MD4C_nonchimeric.fa, 100.0% matched Total reads: 44729 Total joined: 3318 Average join len: 9.82 Stdev join len: 5.25 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 72.6% passed 3318 FASTQ recs (3318) 2410 Converted (2410, 72.6%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4C_truncated.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4C_truncated.fa 00:00 18Mb 2285 seqs, 1930 uniques, 1813 singletons (93.9%) 00:00 18Mb Min size 1, median 1, max 36, avg 1.18 00:00 18Mb 0.1% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4C_derep.fa 00:00 18Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4C_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4C_derep.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4C_derep.fa 00:00 6.3Mb Getting sizes 00:00 6.3Mb Sorting 117 sequences 00:00 6.3Mb 0.9% Writing output 00:00 6.3Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 45 OTUs, 2 chimeras (1.7%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4C_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4C_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:01 26Mb 77.6% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 94.7% Build index 00:02 82Mb 100.0% Build index 00:02 94Mb 2.2% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 0/45 chimeras found (0.0%) 00:02 96Mb 2.2% Writing 45 non-chimeras 00:02 96Mb 100.0% Writing 45 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4C_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4C_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching HSM5MD4C_join.fq, 0.0% matched 00:00 54Mb 100.0% Searching HSM5MD4C_join.fq, 45.5% matched 00:00 3.3Mb 0.0% Rows 00:00 532Mb 100.0% Rows 00:00 532Mb Reading pointers...done. 00:00 534Mb Reading seqs...done. 00:00 709Mb 0.1% Searching HSM5MD4C_nonchimeric.fa, 0.0% matched 00:00 727Mb 100.0% Searching HSM5MD4C_nonchimeric.fa, 100.0% matched Total reads: 44729 Total joined: 3318 Average join len: 9.82 Stdev join len: 5.25 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 72.6% passed 3318 FASTQ recs (3318) 2410 Converted (2410, 72.6%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4C_truncated.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4C_truncated.fa 00:00 18Mb 2285 seqs, 1930 uniques, 1813 singletons (93.9%) 00:00 18Mb Min size 1, median 1, max 36, avg 1.18 00:00 18Mb 0.1% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4C_derep.fa 00:00 18Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4C_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4C_derep.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4C_derep.fa 00:00 6.3Mb Getting sizes 00:00 6.3Mb Sorting 117 sequences 00:00 6.3Mb 0.9% Writing output 00:00 6.3Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 45 OTUs, 2 chimeras (1.7%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4C_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4C_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:01 26Mb 2.1% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 40.8% Build index 00:02 82Mb 100.0% Build index 00:02 95Mb 2.2% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 0/45 chimeras found (0.0%) 00:02 96Mb 2.2% Writing 45 non-chimeras 00:02 96Mb 100.0% Writing 45 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4C_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4C_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching HSM5MD4C_join.fq, 0.0% matched 00:00 54Mb 100.0% Searching HSM5MD4C_join.fq, 45.5% matched 00:00 3.3Mb 0.0% Rows 00:01 44Mb 6.7% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:02 709Mb 0.1% Searching HSM5MD4C_nonchimeric.fa, 0.0% matched 00:02 727Mb 100.0% Searching HSM5MD4C_nonchimeric.fa, 100.0% matched