Total reads: 210890 Total joined: 7484 Average join len: 14.35 Stdev join len: 4.70 00:00 47Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 69.6% passed 7484 FASTQ recs (7484) 5206 Converted (5206, 69.6%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4R_truncated.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4R_truncated.fa 00:00 19Mb 4859 seqs, 2224 uniques, 1974 singletons (88.8%) 00:00 19Mb Min size 1, median 1, max 327, avg 2.18 00:00 19Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4R_derep.fa 00:00 19Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4R_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4R_derep.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4R_derep.fa 00:00 6.5Mb Getting sizes 00:00 6.5Mb Sorting 250 sequences 00:00 6.5Mb 0.4% Writing output 00:00 6.5Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 29 OTUs, 5 chimeras (2.0%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4R_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4R_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:01 26Mb 43.4% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 56.9% Build index 00:02 82Mb 100.0% Build index 00:02 93Mb 3.3% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 1/29 chimeras found (3.4%) 00:02 96Mb 3.4% Writing 28 non-chimeras 00:02 96Mb 100.0% Writing 28 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4R_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4R_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching HSM5MD4R_join.fq, 0.0% matched 00:00 54Mb 100.0% Searching HSM5MD4R_join.fq, 75.8% matched 00:00 3.3Mb 0.0% Rows 00:01 35Mb 4.9% Rows 00:02 521Mb 96.7% Rows 00:02 532Mb 100.0% Rows 00:02 532Mb Reading pointers...done. 00:02 534Mb Reading seqs...done. 00:02 709Mb 0.1% Searching HSM5MD4R_nonchimeric.fa, 0.0% matched 00:02 727Mb 100.0% Searching HSM5MD4R_nonchimeric.fa, 100.0% matched Total reads: 210890 Total joined: 7484 Average join len: 14.35 Stdev join len: 4.70 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 69.6% passed 7484 FASTQ recs (7484) 5206 Converted (5206, 69.6%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4R_truncated.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4R_truncated.fa 00:00 19Mb 4859 seqs, 2224 uniques, 1974 singletons (88.8%) 00:00 19Mb Min size 1, median 1, max 327, avg 2.18 00:00 19Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4R_derep.fa 00:00 19Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4R_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4R_derep.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4R_derep.fa 00:00 6.5Mb Getting sizes 00:00 6.5Mb Sorting 250 sequences 00:00 6.5Mb 0.4% Writing output 00:00 6.5Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 29 OTUs, 5 chimeras (2.0%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4R_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4R_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:01 26Mb 56.1% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 97.4% Build index 00:02 82Mb 100.0% Build index 00:02 93Mb 3.3% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 1/29 chimeras found (3.4%) 00:02 96Mb 3.4% Writing 28 non-chimeras 00:02 96Mb 100.0% Writing 28 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4R_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4R_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching HSM5MD4R_join.fq, 0.0% matched 00:00 55Mb 100.0% Searching HSM5MD4R_join.fq, 75.9% matched 00:00 3.3Mb 0.0% Rows 00:00 532Mb 100.0% Rows 00:00 532Mb Reading pointers...done. 00:00 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching HSM5MD4R_nonchimeric.fa, 0.0% matched 00:01 727Mb 100.0% Searching HSM5MD4R_nonchimeric.fa, 100.0% matched Total reads: 210890 Total joined: 7484 Average join len: 14.35 Stdev join len: 4.70 00:00 48Mb 0.1% Filtering 00:01 15Mb 100.0% Filtering, 69.6% passed 7484 FASTQ recs (7484) 5206 Converted (5206, 69.6%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4R_truncated.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4R_truncated.fa 00:00 19Mb 4859 seqs, 2224 uniques, 1974 singletons (88.8%) 00:00 19Mb Min size 1, median 1, max 327, avg 2.18 00:00 19Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4R_derep.fa 00:00 19Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4R_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4R_derep.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4R_derep.fa 00:00 6.5Mb Getting sizes 00:00 6.5Mb Sorting 250 sequences 00:00 6.5Mb 0.4% Writing output 00:00 6.5Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 29 OTUs, 5 chimeras (2.0%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4R_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4R_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:01 26Mb 64.4% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 87.5% Build index 00:02 82Mb 100.0% Build index 00:02 94Mb 3.3% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 1/29 chimeras found (3.4%) 00:02 96Mb 3.4% Writing 28 non-chimeras 00:02 96Mb 100.0% Writing 28 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4R_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4R_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching HSM5MD4R_join.fq, 0.0% matched 00:00 55Mb 100.0% Searching HSM5MD4R_join.fq, 75.8% matched 00:00 3.3Mb 0.0% Rows 00:00 532Mb 100.0% Rows 00:00 532Mb Reading pointers...done. 00:00 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching HSM5MD4R_nonchimeric.fa, 0.0% matched 00:01 727Mb 100.0% Searching HSM5MD4R_nonchimeric.fa, 100.0% matched Total reads: 210890 Total joined: 7484 Average join len: 14.35 Stdev join len: 4.70 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 69.6% passed 7484 FASTQ recs (7484) 5206 Converted (5206, 69.6%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4R_truncated.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4R_truncated.fa 00:00 19Mb 4859 seqs, 2224 uniques, 1974 singletons (88.8%) 00:00 19Mb Min size 1, median 1, max 327, avg 2.18 00:00 19Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4R_derep.fa 00:00 19Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4R_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4R_derep.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4R_derep.fa 00:00 6.5Mb Getting sizes 00:00 6.5Mb Sorting 250 sequences 00:00 6.5Mb 0.4% Writing output 00:00 6.5Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 29 OTUs, 5 chimeras (2.0%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4R_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4R_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:01 26Mb 39.3% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 0.2% Build index 00:03 82Mb 82.9% Build index 00:03 82Mb 100.0% Build index 00:03 95Mb 3.3% Search 0/1 chimeras found (0.0%) 00:03 96Mb 100.0% Search 1/29 chimeras found (3.4%) 00:03 96Mb 3.4% Writing 28 non-chimeras 00:03 96Mb 100.0% Writing 28 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4R_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD4R_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching HSM5MD4R_join.fq, 0.0% matched 00:00 55Mb 100.0% Searching HSM5MD4R_join.fq, 75.8% matched 00:00 3.3Mb 0.0% Rows 00:01 366Mb 65.9% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching HSM5MD4R_nonchimeric.fa, 0.0% matched 00:01 727Mb 100.0% Searching HSM5MD4R_nonchimeric.fa, 100.0% matched