Total reads: 281881 Total joined: 12126 Average join len: 13.03 Stdev join len: 5.28 00:00 47Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 67.5% passed 12126 FASTQ recs (12.1k) 8190 Converted (8190, 67.5%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD5H_truncated.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD5H_truncated.fa 00:00 20Mb 7731 seqs, 3954 uniques, 3605 singletons (91.2%) 00:00 20Mb Min size 1, median 1, max 708, avg 1.96 00:00 20Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD5H_derep.fa 00:00 20Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD5H_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD5H_derep.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD5H_derep.fa 00:00 6.9Mb Getting sizes 00:00 6.9Mb Sorting 349 sequences 00:00 6.9Mb 0.3% Writing output 00:00 6.9Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 34 OTUs, 3 chimeras (0.9%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD5H_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD5H_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:01 26Mb 47.7% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 30.1% Build index 00:02 82Mb 100.0% Build index 00:02 93Mb 2.9% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 1/34 chimeras found (2.9%) 00:02 96Mb 2.9% Writing 33 non-chimeras 00:02 96Mb 100.0% Writing 33 non-chimeras 00:01 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD5H_nonchimeric.fa 00:01 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD5H_nonchimeric.fa 00:01 6.1Mb 0.1% Masking 00:01 6.1Mb 100.0% Masking 00:01 6.9Mb 0.1% Word stats 00:01 6.9Mb 100.0% Word stats 00:01 6.9Mb 100.0% Alloc rows 00:01 6.9Mb 0.1% Build index 00:01 6.9Mb 100.0% Build index 00:01 40Mb 0.1% Searching HSM5MD5H_join.fq, 0.0% matched 00:01 55Mb 100.0% Searching HSM5MD5H_join.fq, 73.0% matched 00:00 3.3Mb 0.0% Rows 00:01 337Mb 62.0% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching HSM5MD5H_nonchimeric.fa, 0.0% matched 00:01 727Mb 100.0% Searching HSM5MD5H_nonchimeric.fa, 93.9% matched Total reads: 281881 Total joined: 12126 Average join len: 13.03 Stdev join len: 5.28 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 67.5% passed 12126 FASTQ recs (12.1k) 8190 Converted (8190, 67.5%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD5H_truncated.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD5H_truncated.fa 00:00 20Mb 7731 seqs, 3954 uniques, 3605 singletons (91.2%) 00:00 20Mb Min size 1, median 1, max 708, avg 1.96 00:00 20Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD5H_derep.fa 00:00 20Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD5H_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD5H_derep.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD5H_derep.fa 00:00 6.9Mb Getting sizes 00:00 6.9Mb Sorting 349 sequences 00:00 6.9Mb 0.3% Writing output 00:00 6.9Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 34 OTUs, 3 chimeras (0.9%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD5H_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD5H_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:01 26Mb 30.8% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 78.2% Build index 00:02 82Mb 100.0% Build index 00:02 93Mb 2.9% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 1/34 chimeras found (2.9%) 00:02 96Mb 2.9% Writing 33 non-chimeras 00:02 96Mb 100.0% Writing 33 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD5H_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD5H_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching HSM5MD5H_join.fq, 0.0% matched 00:00 54Mb 100.0% Searching HSM5MD5H_join.fq, 73.0% matched 00:00 3.3Mb 0.0% Rows 00:01 262Mb 50.3% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching HSM5MD5H_nonchimeric.fa, 0.0% matched 00:01 727Mb 100.0% Searching HSM5MD5H_nonchimeric.fa, 93.9% matched Total reads: 281881 Total joined: 12126 Average join len: 13.03 Stdev join len: 5.28 00:00 47Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 67.5% passed 12126 FASTQ recs (12.1k) 8190 Converted (8190, 67.5%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD5H_truncated.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD5H_truncated.fa 00:00 20Mb 7731 seqs, 3954 uniques, 3605 singletons (91.2%) 00:00 20Mb Min size 1, median 1, max 708, avg 1.96 00:00 20Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD5H_derep.fa 00:00 20Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD5H_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD5H_derep.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD5H_derep.fa 00:00 6.9Mb Getting sizes 00:00 6.9Mb Sorting 349 sequences 00:00 6.9Mb 0.3% Writing output 00:00 6.9Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 34 OTUs, 3 chimeras (0.9%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD5H_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD5H_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:01 58Mb 99.8% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:01 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:01 25Mb 0.1% Masking 00:01 25Mb 100.0% Masking 00:01 26Mb 0.1% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 12.6% Build index 00:02 82Mb 100.0% Build index 00:02 93Mb 2.9% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 1/34 chimeras found (2.9%) 00:02 96Mb 2.9% Writing 33 non-chimeras 00:02 96Mb 100.0% Writing 33 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD5H_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD5H_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching HSM5MD5H_join.fq, 0.0% matched 00:01 55Mb 29.3% Searching HSM5MD5H_join.fq, 71.9% matched 00:01 55Mb 100.0% Searching HSM5MD5H_join.fq, 73.0% matched 00:00 3.3Mb 0.0% Rows 00:00 532Mb 100.0% Rows 00:00 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching HSM5MD5H_nonchimeric.fa, 0.0% matched 00:01 727Mb 100.0% Searching HSM5MD5H_nonchimeric.fa, 93.9% matched Total reads: 281881 Total joined: 12126 Average join len: 13.03 Stdev join len: 5.28 00:00 47Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 67.5% passed 12126 FASTQ recs (12.1k) 8190 Converted (8190, 67.5%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD5H_truncated.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD5H_truncated.fa 00:00 20Mb 7731 seqs, 3954 uniques, 3605 singletons (91.2%) 00:00 20Mb Min size 1, median 1, max 708, avg 1.96 00:00 20Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD5H_derep.fa 00:00 20Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD5H_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD5H_derep.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD5H_derep.fa 00:00 6.9Mb Getting sizes 00:00 6.9Mb Sorting 349 sequences 00:00 6.9Mb 0.3% Writing output 00:00 6.9Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 34 OTUs, 3 chimeras (0.9%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD5H_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD5H_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:01 54Mb 74.2% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:01 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:01 25Mb 0.1% Masking 00:01 25Mb 100.0% Masking 00:01 26Mb 0.1% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 4.4% Build index 00:03 82Mb 81.7% Build index 00:03 82Mb 100.0% Build index 00:03 93Mb 2.9% Search 0/1 chimeras found (0.0%) 00:03 96Mb 100.0% Search 1/34 chimeras found (2.9%) 00:03 96Mb 2.9% Writing 33 non-chimeras 00:03 96Mb 100.0% Writing 33 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD5H_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/HSM5MD5H_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching HSM5MD5H_join.fq, 0.0% matched 00:01 55Mb 95.7% Searching HSM5MD5H_join.fq, 72.5% matched 00:01 55Mb 100.0% Searching HSM5MD5H_join.fq, 73.0% matched 00:00 3.3Mb 0.0% Rows 00:01 518Mb 95.7% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching HSM5MD5H_nonchimeric.fa, 0.0% matched 00:01 727Mb 100.0% Searching HSM5MD5H_nonchimeric.fa, 93.9% matched