Total reads: 352487 Total joined: 40197 Average join len: 12.76 Stdev join len: 5.35 00:00 47Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 69.1% passed 40197 FASTQ recs (40.2k) 27770 Converted (27.8k, 69.1%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ8Y_truncated.fa 00:00 45Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ8Y_truncated.fa 00:00 24Mb 26340 seqs, 15421 uniques, 14305 singletons (92.8%) 00:00 24Mb Min size 1, median 1, max 1049, avg 1.71 00:00 24Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ8Y_derep.fa 00:00 24Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ8Y_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ8Y_derep.fa 00:00 43Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ8Y_derep.fa 00:00 9.2Mb Getting sizes 00:00 9.3Mb Sorting 1116 sequences 00:00 9.3Mb 0.1% Writing output 00:00 9.3Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 50 OTUs, 20 chimeras (1.8%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ8Y_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ8Y_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:01 58Mb 94.4% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:01 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:01 25Mb 0.1% Masking 00:01 25Mb 100.0% Masking 00:01 26Mb 0.1% Word stats 00:02 26Mb 54.4% Word stats 00:02 26Mb 100.0% Word stats 00:02 26Mb 100.0% Alloc rows 00:02 82Mb 0.1% Build index 00:03 82Mb 23.3% Build index 00:04 82Mb 72.7% Build index 00:04 82Mb 100.0% Build index 00:04 93Mb 2.0% Search 0/1 chimeras found (0.0%) 00:04 97Mb 100.0% Search 0/50 chimeras found (0.0%) 00:04 97Mb 2.0% Writing 50 non-chimeras 00:04 97Mb 100.0% Writing 50 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ8Y_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ8Y_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5FZ8Y_join.fq, 0.0% matched 00:01 54Mb 14.6% Searching MSM5FZ8Y_join.fq, 65.5% matched 00:02 54Mb 57.2% Searching MSM5FZ8Y_join.fq, 70.7% matched 00:03 54Mb 91.9% Searching MSM5FZ8Y_join.fq, 64.0% matched 00:03 54Mb 100.0% Searching MSM5FZ8Y_join.fq, 64.9% matched 00:00 3.3Mb 0.0% Rows 00:01 309Mb 57.6% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:02 709Mb 0.1% Searching MSM5FZ8Y_nonchimeric.fa, 0.0% matched 00:02 728Mb 100.0% Searching MSM5FZ8Y_nonchimeric.fa, 92.0% matched Total reads: 352487 Total joined: 40197 Average join len: 12.76 Stdev join len: 5.35 00:00 48Mb 0.1% Filtering 00:01 15Mb 100.0% Filtering, 69.1% passed 40197 FASTQ recs (40.2k) 27770 Converted (27.8k, 69.1%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ8Y_truncated.fa 00:00 45Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ8Y_truncated.fa 00:00 24Mb 26340 seqs, 15421 uniques, 14305 singletons (92.8%) 00:00 24Mb Min size 1, median 1, max 1049, avg 1.71 00:00 24Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ8Y_derep.fa 00:00 24Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ8Y_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ8Y_derep.fa 00:00 43Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ8Y_derep.fa 00:00 9.2Mb Getting sizes 00:00 9.3Mb Sorting 1116 sequences 00:00 9.3Mb 0.1% Writing output 00:00 9.3Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 50 OTUs, 20 chimeras (1.8%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ8Y_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ8Y_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:01 25Mb 23.9% Masking 00:01 25Mb 100.0% Masking 00:01 26Mb 0.1% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 31.8% Build index 00:02 82Mb 100.0% Build index 00:02 95Mb 2.0% Search 0/1 chimeras found (0.0%) 00:02 97Mb 100.0% Search 0/50 chimeras found (0.0%) 00:02 97Mb 2.0% Writing 50 non-chimeras 00:02 97Mb 100.0% Writing 50 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ8Y_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ8Y_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5FZ8Y_join.fq, 0.0% matched 00:01 54Mb 24.6% Searching MSM5FZ8Y_join.fq, 61.3% matched 00:01 54Mb 100.0% Searching MSM5FZ8Y_join.fq, 64.9% matched 00:00 3.3Mb 0.0% Rows 00:01 37Mb 5.3% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching MSM5FZ8Y_nonchimeric.fa, 0.0% matched 00:01 728Mb 100.0% Searching MSM5FZ8Y_nonchimeric.fa, 92.0% matched Total reads: 352487 Total joined: 40197 Average join len: 12.76 Stdev join len: 5.35 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 69.1% passed 40197 FASTQ recs (40.2k) 27770 Converted (27.8k, 69.1%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ8Y_truncated.fa 00:00 45Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ8Y_truncated.fa 00:00 24Mb 26340 seqs, 15421 uniques, 14305 singletons (92.8%) 00:00 24Mb Min size 1, median 1, max 1049, avg 1.71 00:00 24Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ8Y_derep.fa 00:00 24Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ8Y_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ8Y_derep.fa 00:00 43Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ8Y_derep.fa 00:00 9.2Mb Getting sizes 00:00 9.3Mb Sorting 1116 sequences 00:00 9.3Mb 0.1% Writing output 00:00 9.3Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 50 OTUs, 20 chimeras (1.8%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ8Y_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ8Y_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:01 25Mb 87.6% Masking 00:01 25Mb 100.0% Masking 00:01 26Mb 0.1% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 50.6% Build index 00:02 82Mb 100.0% Build index 00:02 93Mb 2.0% Search 0/1 chimeras found (0.0%) 00:02 97Mb 100.0% Search 0/50 chimeras found (0.0%) 00:02 97Mb 2.0% Writing 50 non-chimeras 00:02 97Mb 100.0% Writing 50 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ8Y_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ8Y_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5FZ8Y_join.fq, 0.0% matched 00:01 54Mb 18.9% Searching MSM5FZ8Y_join.fq, 60.7% matched 00:02 54Mb 67.8% Searching MSM5FZ8Y_join.fq, 66.3% matched 00:02 54Mb 100.0% Searching MSM5FZ8Y_join.fq, 64.9% matched 00:00 3.3Mb 0.0% Rows 00:00 532Mb 100.0% Rows 00:00 532Mb Reading pointers...done. 00:00 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching MSM5FZ8Y_nonchimeric.fa, 0.0% matched 00:01 728Mb 100.0% Searching MSM5FZ8Y_nonchimeric.fa, 92.0% matched Total reads: 352487 Total joined: 40197 Average join len: 12.76 Stdev join len: 5.35 00:00 47Mb 0.1% Filtering 00:01 48Mb 96.6% Filtering, 70.6% passed 00:01 15Mb 100.0% Filtering, 69.1% passed 40197 FASTQ recs (40.2k) 27770 Converted (27.8k, 69.1%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ8Y_truncated.fa 00:00 45Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ8Y_truncated.fa 00:00 24Mb 26340 seqs, 15421 uniques, 14305 singletons (92.8%) 00:00 24Mb Min size 1, median 1, max 1049, avg 1.71 00:00 24Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ8Y_derep.fa 00:00 24Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ8Y_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ8Y_derep.fa 00:00 43Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ8Y_derep.fa 00:00 9.2Mb Getting sizes 00:00 9.3Mb Sorting 1116 sequences 00:00 9.3Mb 0.1% Writing output 00:00 9.3Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 51 OTUs, 20 chimeras (1.8%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ8Y_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ8Y_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:01 40Mb 0.2% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:01 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:01 25Mb 0.1% Masking 00:01 25Mb 100.0% Masking 00:01 26Mb 0.1% Word stats 00:02 26Mb 59.5% Word stats 00:02 26Mb 100.0% Word stats 00:02 26Mb 100.0% Alloc rows 00:02 82Mb 0.1% Build index 00:03 82Mb 47.5% Build index 00:03 82Mb 100.0% Build index 00:03 93Mb 1.9% Search 0/1 chimeras found (0.0%) 00:03 97Mb 100.0% Search 0/51 chimeras found (0.0%) 00:03 97Mb 2.0% Writing 51 non-chimeras 00:03 97Mb 100.0% Writing 51 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ8Y_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ8Y_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5FZ8Y_join.fq, 0.0% matched 00:01 54Mb 4.9% Searching MSM5FZ8Y_join.fq, 81.8% matched 00:02 54Mb 41.4% Searching MSM5FZ8Y_join.fq, 69.2% matched 00:03 54Mb 73.6% Searching MSM5FZ8Y_join.fq, 66.2% matched 00:03 54Mb 100.0% Searching MSM5FZ8Y_join.fq, 64.9% matched 00:00 3.3Mb 0.0% Rows 00:01 78Mb 13.7% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:02 709Mb 0.1% Searching MSM5FZ8Y_nonchimeric.fa, 0.0% matched 00:02 728Mb 100.0% Searching MSM5FZ8Y_nonchimeric.fa, 92.2% matched