Total reads: 362821 Total joined: 112907 Average join len: 8.75 Stdev join len: 4.76 00:00 48Mb 0.1% Filtering 00:01 48Mb 8.7% Filtering, 100.0% passed 00:01 15Mb 100.0% Filtering, 73.8% passed 112907 FASTQ recs (112.9k) 83366 Converted (83.4k, 73.8%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9N_truncated.fa 00:01 52Mb 77.6% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9N_truncated.fa 00:01 55Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9N_truncated.fa 00:01 37Mb 79060 seqs, 47070 uniques, 44012 singletons (93.5%) 00:01 37Mb Min size 1, median 1, max 3196, avg 1.68 00:01 37Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9N_derep.fa 00:01 37Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9N_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9N_derep.fa 00:00 49Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9N_derep.fa 00:00 15Mb Getting sizes 00:00 16Mb Sorting 3058 sequences 00:00 16Mb 0.0% Writing output 00:00 16Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:01 45Mb 19.2% 24 OTUs, 5 chimeras (0.9%) 00:01 46Mb 100.0% 64 OTUs, 93 chimeras (3.0%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9N_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9N_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:01 26Mb 16.8% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 14.8% Build index 00:03 82Mb 96.8% Build index 00:03 82Mb 100.0% Build index 00:03 93Mb 1.5% Search 0/1 chimeras found (0.0%) 00:03 96Mb 100.0% Search 1/64 chimeras found (1.6%) 00:03 96Mb 1.6% Writing 63 non-chimeras 00:03 96Mb 100.0% Writing 63 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9N_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9N_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5FZ9N_join.fq, 0.0% matched 00:01 54Mb 10.5% Searching MSM5FZ9N_join.fq, 64.5% matched 00:02 55Mb 25.5% Searching MSM5FZ9N_join.fq, 55.8% matched 00:03 55Mb 43.1% Searching MSM5FZ9N_join.fq, 62.9% matched 00:04 55Mb 59.3% Searching MSM5FZ9N_join.fq, 64.3% matched 00:05 55Mb 73.9% Searching MSM5FZ9N_join.fq, 60.7% matched 00:06 55Mb 87.7% Searching MSM5FZ9N_join.fq, 59.9% matched 00:06 55Mb 100.0% Searching MSM5FZ9N_join.fq, 60.9% matched 00:00 3.3Mb 0.0% Rows 00:01 126Mb 22.3% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:03 709Mb 0.1% Searching MSM5FZ9N_nonchimeric.fa, 0.0% matched 00:03 727Mb 100.0% Searching MSM5FZ9N_nonchimeric.fa, 54.0% matched Total reads: 362821 Total joined: 112907 Average join len: 8.75 Stdev join len: 4.76 00:00 48Mb 0.1% Filtering 00:01 48Mb 0.2% Filtering, 0.0% passed 00:01 15Mb 100.0% Filtering, 73.8% passed 112907 FASTQ recs (112.9k) 83366 Converted (83.4k, 73.8%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9N_truncated.fa 00:00 55Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9N_truncated.fa 00:00 37Mb 79060 seqs, 47070 uniques, 44012 singletons (93.5%) 00:00 37Mb Min size 1, median 1, max 3196, avg 1.68 00:00 37Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9N_derep.fa 00:01 37Mb 58.9% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9N_derep.fa 00:01 37Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9N_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9N_derep.fa 00:00 49Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9N_derep.fa 00:00 15Mb Getting sizes 00:00 16Mb Sorting 3058 sequences 00:00 16Mb 0.0% Writing output 00:00 16Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 64 OTUs, 93 chimeras (3.0%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9N_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9N_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:01 25Mb 50.7% Masking 00:01 25Mb 100.0% Masking 00:01 26Mb 0.1% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 27.5% Build index 00:02 82Mb 100.0% Build index 00:02 93Mb 1.5% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 1/64 chimeras found (1.6%) 00:02 96Mb 1.6% Writing 63 non-chimeras 00:02 96Mb 100.0% Writing 63 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9N_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9N_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5FZ9N_join.fq, 0.0% matched 00:01 54Mb 0.8% Searching MSM5FZ9N_join.fq, 78.4% matched 00:02 54Mb 16.3% Searching MSM5FZ9N_join.fq, 60.1% matched 00:03 54Mb 31.4% Searching MSM5FZ9N_join.fq, 57.2% matched 00:04 54Mb 50.7% Searching MSM5FZ9N_join.fq, 65.3% matched 00:05 54Mb 65.2% Searching MSM5FZ9N_join.fq, 62.6% matched 00:06 54Mb 79.1% Searching MSM5FZ9N_join.fq, 60.8% matched 00:07 54Mb 95.4% Searching MSM5FZ9N_join.fq, 60.4% matched 00:07 54Mb 100.0% Searching MSM5FZ9N_join.fq, 60.9% matched 00:00 3.3Mb 0.0% Rows 00:01 469Mb 85.8% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching MSM5FZ9N_nonchimeric.fa, 0.0% matched 00:01 727Mb 100.0% Searching MSM5FZ9N_nonchimeric.fa, 54.0% matched Total reads: 362821 Total joined: 112907 Average join len: 8.75 Stdev join len: 4.76 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 73.8% passed 112907 FASTQ recs (112.9k) 83366 Converted (83.4k, 73.8%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9N_truncated.fa 00:00 55Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9N_truncated.fa 00:00 37Mb 79060 seqs, 47070 uniques, 44012 singletons (93.5%) 00:00 37Mb Min size 1, median 1, max 3196, avg 1.68 00:00 37Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9N_derep.fa 00:01 37Mb 56.3% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9N_derep.fa 00:01 37Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9N_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9N_derep.fa 00:00 49Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9N_derep.fa 00:00 15Mb Getting sizes 00:00 16Mb Sorting 3058 sequences 00:00 16Mb 0.0% Writing output 00:00 16Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 64 OTUs, 93 chimeras (3.0%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9N_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9N_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:01 25Mb 32.7% Masking 00:01 25Mb 100.0% Masking 00:01 26Mb 0.1% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 26.6% Build index 00:02 82Mb 100.0% Build index 00:02 94Mb 1.5% Search 0/1 chimeras found (0.0%) 00:02 97Mb 100.0% Search 1/64 chimeras found (1.6%) 00:02 97Mb 1.6% Writing 63 non-chimeras 00:02 97Mb 100.0% Writing 63 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9N_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9N_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5FZ9N_join.fq, 0.0% matched 00:01 52Mb 0.2% Searching MSM5FZ9N_join.fq, 0.0% matched 00:02 55Mb 27.9% Searching MSM5FZ9N_join.fq, 55.9% matched 00:03 55Mb 60.6% Searching MSM5FZ9N_join.fq, 63.8% matched 00:04 55Mb 87.4% Searching MSM5FZ9N_join.fq, 59.9% matched 00:04 55Mb 100.0% Searching MSM5FZ9N_join.fq, 60.8% matched 00:00 3.3Mb 0.0% Rows 00:00 532Mb 100.0% Rows 00:00 532Mb Reading pointers...done. 00:00 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching MSM5FZ9N_nonchimeric.fa, 0.0% matched 00:01 727Mb 100.0% Searching MSM5FZ9N_nonchimeric.fa, 54.0% matched Total reads: 362821 Total joined: 112907 Average join len: 8.75 Stdev join len: 4.76 00:00 48Mb 0.1% Filtering 00:01 48Mb 54.5% Filtering, 100.0% passed 00:01 15Mb 100.0% Filtering, 73.8% passed 112907 FASTQ recs (112.9k) 83366 Converted (83.4k, 73.8%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9N_truncated.fa 00:00 55Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9N_truncated.fa 00:00 37Mb 79060 seqs, 47070 uniques, 44012 singletons (93.5%) 00:00 37Mb Min size 1, median 1, max 3196, avg 1.68 00:00 37Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9N_derep.fa 00:01 37Mb 22.4% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9N_derep.fa 00:01 37Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9N_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9N_derep.fa 00:00 49Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9N_derep.fa 00:00 15Mb Getting sizes 00:00 16Mb Sorting 3058 sequences 00:00 16Mb 0.0% Writing output 00:00 16Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 65 OTUs, 93 chimeras (3.0%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9N_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9N_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:01 45Mb 17.9% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:01 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:01 25Mb 0.1% Masking 00:01 25Mb 100.0% Masking 00:01 26Mb 0.1% Word stats 00:02 26Mb 81.6% Word stats 00:02 26Mb 100.0% Word stats 00:02 26Mb 100.0% Alloc rows 00:02 82Mb 0.1% Build index 00:03 82Mb 75.2% Build index 00:03 82Mb 100.0% Build index 00:03 93Mb 1.5% Search 0/1 chimeras found (0.0%) 00:03 96Mb 100.0% Search 1/65 chimeras found (1.5%) 00:03 96Mb 1.5% Writing 64 non-chimeras 00:03 96Mb 100.0% Writing 64 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9N_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9N_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5FZ9N_join.fq, 0.0% matched 00:01 55Mb 15.0% Searching MSM5FZ9N_join.fq, 60.6% matched 00:02 55Mb 41.8% Searching MSM5FZ9N_join.fq, 62.3% matched 00:03 55Mb 68.3% Searching MSM5FZ9N_join.fq, 61.8% matched 00:04 55Mb 93.8% Searching MSM5FZ9N_join.fq, 60.2% matched 00:04 55Mb 100.0% Searching MSM5FZ9N_join.fq, 60.9% matched 00:00 3.3Mb 0.0% Rows 00:01 479Mb 88.3% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching MSM5FZ9N_nonchimeric.fa, 0.0% matched 00:01 727Mb 100.0% Searching MSM5FZ9N_nonchimeric.fa, 56.2% matched