Total reads: 266064 Total joined: 25975 Average join len: 13.73 Stdev join len: 5.03 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 68.1% passed 25975 FASTQ recs (26.0k) 17696 Converted (17.7k, 68.1%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9V_truncated.fa 00:00 43Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9V_truncated.fa 00:01 22Mb 16797 seqs, 9182 uniques, 8315 singletons (90.6%) 00:01 22Mb Min size 1, median 1, max 378, avg 1.83 00:01 22Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9V_derep.fa 00:01 22Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9V_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9V_derep.fa 00:00 42Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9V_derep.fa 00:00 8.0Mb Getting sizes 00:00 8.0Mb Sorting 867 sequences 00:00 8.0Mb 0.1% Writing output 00:00 8.0Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 54 OTUs, 22 chimeras (2.5%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9V_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9V_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:01 26Mb 34.1% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 53.7% Build index 00:02 82Mb 100.0% Build index 00:02 93Mb 1.8% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 0/54 chimeras found (0.0%) 00:02 96Mb 1.9% Writing 54 non-chimeras 00:02 96Mb 100.0% Writing 54 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9V_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9V_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5FZ9V_join.fq, 0.0% matched 00:01 55Mb 25.0% Searching MSM5FZ9V_join.fq, 71.5% matched 00:01 55Mb 100.0% Searching MSM5FZ9V_join.fq, 72.4% matched 00:00 3.3Mb 0.0% Rows 00:01 191Mb 36.9% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:02 709Mb 0.1% Searching MSM5FZ9V_nonchimeric.fa, 0.0% matched 00:02 727Mb 100.0% Searching MSM5FZ9V_nonchimeric.fa, 96.3% matched Total reads: 266064 Total joined: 25975 Average join len: 13.73 Stdev join len: 5.03 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 68.1% passed 25975 FASTQ recs (26.0k) 17696 Converted (17.7k, 68.1%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9V_truncated.fa 00:00 43Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9V_truncated.fa 00:00 22Mb 16797 seqs, 9182 uniques, 8315 singletons (90.6%) 00:00 22Mb Min size 1, median 1, max 378, avg 1.83 00:00 22Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9V_derep.fa 00:01 22Mb 93.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9V_derep.fa 00:01 22Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9V_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9V_derep.fa 00:00 42Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9V_derep.fa 00:00 8.0Mb Getting sizes 00:00 8.0Mb Sorting 867 sequences 00:00 8.0Mb 0.1% Writing output 00:00 8.0Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 54 OTUs, 21 chimeras (2.4%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9V_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9V_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:01 26Mb 62.2% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 67.1% Build index 00:02 82Mb 100.0% Build index 00:02 94Mb 1.8% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 0/54 chimeras found (0.0%) 00:02 96Mb 1.9% Writing 54 non-chimeras 00:02 96Mb 100.0% Writing 54 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9V_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9V_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5FZ9V_join.fq, 0.0% matched 00:01 55Mb 88.1% Searching MSM5FZ9V_join.fq, 71.4% matched 00:01 55Mb 100.0% Searching MSM5FZ9V_join.fq, 72.4% matched 00:00 3.3Mb 0.0% Rows 00:00 532Mb 100.0% Rows 00:00 532Mb Reading pointers...done. 00:00 534Mb Reading seqs...done. 00:00 709Mb 0.1% Searching MSM5FZ9V_nonchimeric.fa, 0.0% matched 00:01 727Mb 61.4% Searching MSM5FZ9V_nonchimeric.fa, 100.0% matched 00:01 727Mb 100.0% Searching MSM5FZ9V_nonchimeric.fa, 96.3% matched Total reads: 266064 Total joined: 25975 Average join len: 13.73 Stdev join len: 5.03 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 68.1% passed 25975 FASTQ recs (26.0k) 17696 Converted (17.7k, 68.1%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9V_truncated.fa 00:00 43Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9V_truncated.fa 00:00 22Mb 16797 seqs, 9182 uniques, 8315 singletons (90.6%) 00:00 22Mb Min size 1, median 1, max 378, avg 1.83 00:00 22Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9V_derep.fa 00:01 22Mb 52.8% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9V_derep.fa 00:01 22Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9V_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9V_derep.fa 00:00 42Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9V_derep.fa 00:00 8.0Mb Getting sizes 00:00 8.0Mb Sorting 867 sequences 00:00 8.0Mb 0.1% Writing output 00:00 8.0Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 53 OTUs, 23 chimeras (2.7%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9V_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9V_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:01 26Mb 68.7% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 90.3% Build index 00:02 82Mb 100.0% Build index 00:02 94Mb 1.9% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 0/53 chimeras found (0.0%) 00:02 96Mb 1.9% Writing 53 non-chimeras 00:02 96Mb 100.0% Writing 53 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9V_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9V_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5FZ9V_join.fq, 0.0% matched 00:00 55Mb 100.0% Searching MSM5FZ9V_join.fq, 72.4% matched 00:00 3.3Mb 0.0% Rows 00:01 85Mb 14.7% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching MSM5FZ9V_nonchimeric.fa, 0.0% matched 00:01 727Mb 100.0% Searching MSM5FZ9V_nonchimeric.fa, 96.2% matched Total reads: 266064 Total joined: 25975 Average join len: 13.73 Stdev join len: 5.03 00:00 47Mb 0.1% Filtering 00:01 48Mb 4.7% Filtering, 99.9% passed 00:01 15Mb 100.0% Filtering, 68.1% passed 25975 FASTQ recs (26.0k) 17696 Converted (17.7k, 68.1%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9V_truncated.fa 00:00 43Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9V_truncated.fa 00:00 22Mb 16797 seqs, 9182 uniques, 8315 singletons (90.6%) 00:00 22Mb Min size 1, median 1, max 378, avg 1.83 00:00 22Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9V_derep.fa 00:00 22Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9V_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9V_derep.fa 00:00 42Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9V_derep.fa 00:00 8.0Mb Getting sizes 00:00 8.0Mb Sorting 867 sequences 00:00 8.0Mb 0.1% Writing output 00:00 8.0Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:01 46Mb 30.2% 37 OTUs, 3 chimeras (1.2%) 00:01 46Mb 100.0% 54 OTUs, 22 chimeras (2.5%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9V_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9V_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:01 26Mb 56.6% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 61.8% Build index 00:02 82Mb 100.0% Build index 00:02 95Mb 1.8% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 0/54 chimeras found (0.0%) 00:02 96Mb 1.9% Writing 54 non-chimeras 00:02 96Mb 100.0% Writing 54 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9V_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9V_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5FZ9V_join.fq, 0.0% matched 00:01 55Mb 57.1% Searching MSM5FZ9V_join.fq, 77.5% matched 00:01 55Mb 100.0% Searching MSM5FZ9V_join.fq, 72.4% matched 00:00 3.3Mb 0.0% Rows 00:01 322Mb 59.5% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching MSM5FZ9V_nonchimeric.fa, 0.0% matched 00:01 727Mb 100.0% Searching MSM5FZ9V_nonchimeric.fa, 96.3% matched