Total reads: 216563 Total joined: 22793 Average join len: 13.51 Stdev join len: 5.12 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 66.9% passed 22793 FASTQ recs (22.8k) 15259 Converted (15.3k, 66.9%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9Z_truncated.fa 00:00 43Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9Z_truncated.fa 00:00 21Mb 14476 seqs, 9800 uniques, 9168 singletons (93.6%) 00:00 21Mb Min size 1, median 1, max 391, avg 1.48 00:00 21Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9Z_derep.fa 00:00 21Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9Z_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9Z_derep.fa 00:00 42Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9Z_derep.fa 00:00 8.0Mb Getting sizes 00:00 8.1Mb Sorting 632 sequences 00:00 8.1Mb 0.2% Writing output 00:00 8.1Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 39 OTUs, 6 chimeras (0.9%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9Z_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9Z_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:01 26Mb 19.6% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 40.6% Build index 00:02 82Mb 100.0% Build index 00:02 95Mb 2.5% Search 0/1 chimeras found (0.0%) 00:02 97Mb 100.0% Search 0/39 chimeras found (0.0%) 00:02 97Mb 2.6% Writing 39 non-chimeras 00:02 97Mb 100.0% Writing 39 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9Z_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9Z_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5FZ9Z_join.fq, 0.0% matched 00:01 55Mb 17.2% Searching MSM5FZ9Z_join.fq, 56.7% matched 00:01 55Mb 100.0% Searching MSM5FZ9Z_join.fq, 60.7% matched 00:00 3.3Mb 0.0% Rows 00:01 159Mb 29.3% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:03 709Mb 0.1% Searching MSM5FZ9Z_nonchimeric.fa, 0.0% matched 00:03 728Mb 100.0% Searching MSM5FZ9Z_nonchimeric.fa, 92.3% matched Total reads: 216563 Total joined: 22793 Average join len: 13.51 Stdev join len: 5.12 00:00 47Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 66.9% passed 22793 FASTQ recs (22.8k) 15259 Converted (15.3k, 66.9%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9Z_truncated.fa 00:00 43Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9Z_truncated.fa 00:00 21Mb 14476 seqs, 9800 uniques, 9168 singletons (93.6%) 00:00 21Mb Min size 1, median 1, max 391, avg 1.48 00:00 21Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9Z_derep.fa 00:00 21Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9Z_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9Z_derep.fa 00:00 42Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9Z_derep.fa 00:00 8.0Mb Getting sizes 00:00 8.1Mb Sorting 632 sequences 00:00 8.1Mb 0.2% Writing output 00:00 8.1Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 39 OTUs, 6 chimeras (0.9%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9Z_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9Z_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:01 26Mb 45.3% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 48.0% Build index 00:02 82Mb 100.0% Build index 00:02 93Mb 2.5% Search 0/1 chimeras found (0.0%) 00:02 97Mb 100.0% Search 0/39 chimeras found (0.0%) 00:02 97Mb 2.6% Writing 39 non-chimeras 00:02 97Mb 100.0% Writing 39 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9Z_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9Z_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5FZ9Z_join.fq, 0.0% matched 00:01 55Mb 44.4% Searching MSM5FZ9Z_join.fq, 67.2% matched 00:01 55Mb 100.0% Searching MSM5FZ9Z_join.fq, 60.7% matched 00:00 3.3Mb 0.0% Rows 00:01 346Mb 63.3% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching MSM5FZ9Z_nonchimeric.fa, 0.0% matched 00:01 728Mb 100.0% Searching MSM5FZ9Z_nonchimeric.fa, 92.3% matched Total reads: 216563 Total joined: 22793 Average join len: 13.51 Stdev join len: 5.12 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 66.9% passed 22793 FASTQ recs (22.8k) 15259 Converted (15.3k, 66.9%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9Z_truncated.fa 00:00 43Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9Z_truncated.fa 00:00 21Mb 14476 seqs, 9800 uniques, 9168 singletons (93.6%) 00:00 21Mb Min size 1, median 1, max 391, avg 1.48 00:00 21Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9Z_derep.fa 00:00 21Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9Z_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9Z_derep.fa 00:00 42Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9Z_derep.fa 00:00 8.0Mb Getting sizes 00:00 8.1Mb Sorting 632 sequences 00:00 8.1Mb 0.2% Writing output 00:00 8.1Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 39 OTUs, 6 chimeras (0.9%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9Z_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9Z_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:01 47Mb 27.8% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:01 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:01 25Mb 0.1% Masking 00:01 25Mb 100.0% Masking 00:01 26Mb 0.1% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 0.2% Build index 00:03 82Mb 90.6% Build index 00:03 82Mb 100.0% Build index 00:03 94Mb 2.5% Search 0/1 chimeras found (0.0%) 00:03 97Mb 100.0% Search 0/39 chimeras found (0.0%) 00:03 97Mb 2.6% Writing 39 non-chimeras 00:03 97Mb 100.0% Writing 39 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9Z_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9Z_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5FZ9Z_join.fq, 0.0% matched 00:00 54Mb 100.0% Searching MSM5FZ9Z_join.fq, 60.7% matched 00:00 3.3Mb 0.0% Rows 00:01 99Mb 16.5% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching MSM5FZ9Z_nonchimeric.fa, 0.0% matched 00:01 728Mb 100.0% Searching MSM5FZ9Z_nonchimeric.fa, 92.3% matched Total reads: 216563 Total joined: 22793 Average join len: 13.51 Stdev join len: 5.12 00:00 47Mb 0.1% Filtering 00:01 48Mb 25.3% Filtering, 100.0% passed 00:01 15Mb 100.0% Filtering, 66.9% passed 22793 FASTQ recs (22.8k) 15259 Converted (15.3k, 66.9%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9Z_truncated.fa 00:00 43Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9Z_truncated.fa 00:00 21Mb 14476 seqs, 9800 uniques, 9168 singletons (93.6%) 00:00 21Mb Min size 1, median 1, max 391, avg 1.48 00:00 21Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9Z_derep.fa 00:00 21Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9Z_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9Z_derep.fa 00:00 42Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9Z_derep.fa 00:00 8.0Mb Getting sizes 00:00 8.1Mb Sorting 632 sequences 00:00 8.1Mb 0.2% Writing output 00:00 8.1Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 39 OTUs, 6 chimeras (0.9%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9Z_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9Z_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:01 25Mb 47.5% Masking 00:01 25Mb 100.0% Masking 00:01 26Mb 0.1% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 16.7% Build index 00:03 82Mb 96.8% Build index 00:03 82Mb 100.0% Build index 00:03 93Mb 2.5% Search 0/1 chimeras found (0.0%) 00:03 97Mb 100.0% Search 0/39 chimeras found (0.0%) 00:03 97Mb 2.6% Writing 39 non-chimeras 00:03 97Mb 100.0% Writing 39 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9Z_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZ9Z_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5FZ9Z_join.fq, 0.0% matched 00:01 54Mb 58.0% Searching MSM5FZ9Z_join.fq, 66.7% matched 00:01 54Mb 100.0% Searching MSM5FZ9Z_join.fq, 60.7% matched 00:00 3.3Mb 0.0% Rows 00:01 201Mb 38.5% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:02 709Mb 0.1% Searching MSM5FZ9Z_nonchimeric.fa, 0.0% matched 00:02 728Mb 100.0% Searching MSM5FZ9Z_nonchimeric.fa, 92.3% matched