Total reads: 560851 Total joined: 53820 Average join len: 13.00 Stdev join len: 5.29 00:00 48Mb 0.1% Filtering 00:01 15Mb 100.0% Filtering, 68.1% passed 53820 FASTQ recs (53.8k) 36672 Converted (36.7k, 68.1%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZA2_truncated.fa 00:00 47Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZA2_truncated.fa 00:00 26Mb 34735 seqs, 20007 uniques, 18409 singletons (92.0%) 00:00 26Mb Min size 1, median 1, max 1261, avg 1.74 00:00 26Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZA2_derep.fa 00:00 26Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZA2_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZA2_derep.fa 00:00 44Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZA2_derep.fa 00:00 10Mb Getting sizes 00:00 10Mb Sorting 1598 sequences 00:00 10Mb 0.1% Writing output 00:00 10Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:01 45Mb 0.7% 5 OTUs, 0 chimeras (0.0%) 00:01 46Mb 100.0% 73 OTUs, 80 chimeras (5.0%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZA2_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZA2_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:01 26Mb 28.4% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 51.4% Build index 00:02 82Mb 100.0% Build index 00:02 93Mb 1.4% Search 0/1 chimeras found (0.0%) 00:02 97Mb 100.0% Search 3/73 chimeras found (4.1%) 00:02 97Mb 1.4% Writing 70 non-chimeras 00:02 97Mb 100.0% Writing 70 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZA2_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZA2_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5FZA2_join.fq, 0.0% matched 00:01 54Mb 8.9% Searching MSM5FZA2_join.fq, 72.3% matched 00:02 55Mb 39.0% Searching MSM5FZA2_join.fq, 68.6% matched 00:03 55Mb 75.2% Searching MSM5FZA2_join.fq, 67.0% matched 00:03 55Mb 100.0% Searching MSM5FZA2_join.fq, 64.8% matched 00:00 3.3Mb 0.0% Rows 00:01 102Mb 17.0% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:02 709Mb 0.1% Searching MSM5FZA2_nonchimeric.fa, 0.0% matched 00:02 728Mb 100.0% Searching MSM5FZA2_nonchimeric.fa, 84.3% matched Total reads: 560851 Total joined: 53820 Average join len: 13.00 Stdev join len: 5.29 00:00 48Mb 0.1% Filtering 00:01 48Mb 56.3% Filtering, 100.0% passed 00:01 15Mb 100.0% Filtering, 68.1% passed 53820 FASTQ recs (53.8k) 36672 Converted (36.7k, 68.1%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZA2_truncated.fa 00:00 47Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZA2_truncated.fa 00:00 26Mb 34735 seqs, 20007 uniques, 18409 singletons (92.0%) 00:00 26Mb Min size 1, median 1, max 1261, avg 1.74 00:00 26Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZA2_derep.fa 00:00 26Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZA2_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZA2_derep.fa 00:00 44Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZA2_derep.fa 00:00 10Mb Getting sizes 00:00 10Mb Sorting 1598 sequences 00:00 10Mb 0.1% Writing output 00:00 10Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:01 46Mb 44.4% 46 OTUs, 39 chimeras (5.5%) 00:01 46Mb 100.0% 72 OTUs, 87 chimeras (5.4%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZA2_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZA2_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:01 26Mb 74.5% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 78.7% Build index 00:02 82Mb 100.0% Build index 00:02 94Mb 1.4% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 3/72 chimeras found (4.2%) 00:02 96Mb 1.4% Writing 69 non-chimeras 00:02 96Mb 100.0% Writing 69 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZA2_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZA2_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5FZA2_join.fq, 0.0% matched 00:01 54Mb 44.4% Searching MSM5FZA2_join.fq, 70.1% matched 00:01 54Mb 100.0% Searching MSM5FZA2_join.fq, 64.8% matched 00:00 3.3Mb 0.0% Rows 00:01 16Mb 2.3% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching MSM5FZA2_nonchimeric.fa, 0.0% matched 00:02 728Mb 55.4% Searching MSM5FZA2_nonchimeric.fa, 94.4% matched 00:02 728Mb 100.0% Searching MSM5FZA2_nonchimeric.fa, 84.1% matched Total reads: 560851 Total joined: 53820 Average join len: 13.00 Stdev join len: 5.29 00:00 48Mb 0.1% Filtering 00:01 48Mb 62.6% Filtering, 98.0% passed 00:01 15Mb 100.0% Filtering, 68.1% passed 53820 FASTQ recs (53.8k) 36672 Converted (36.7k, 68.1%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZA2_truncated.fa 00:00 47Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZA2_truncated.fa 00:00 26Mb 34735 seqs, 20007 uniques, 18409 singletons (92.0%) 00:00 26Mb Min size 1, median 1, max 1261, avg 1.74 00:00 26Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZA2_derep.fa 00:00 26Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZA2_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZA2_derep.fa 00:00 44Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZA2_derep.fa 00:00 10Mb Getting sizes 00:00 10Mb Sorting 1598 sequences 00:00 10Mb 0.1% Writing output 00:00 10Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:01 46Mb 40.3% 43 OTUs, 33 chimeras (5.1%) 00:01 46Mb 100.0% 72 OTUs, 87 chimeras (5.4%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZA2_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZA2_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:01 26Mb 66.4% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 93.9% Build index 00:02 82Mb 100.0% Build index 00:02 95Mb 1.4% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 3/72 chimeras found (4.2%) 00:02 96Mb 1.4% Writing 69 non-chimeras 00:02 96Mb 100.0% Writing 69 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZA2_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZA2_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5FZA2_join.fq, 0.0% matched 00:01 54Mb 54.7% Searching MSM5FZA2_join.fq, 71.1% matched 00:01 54Mb 100.0% Searching MSM5FZA2_join.fq, 64.8% matched 00:00 3.3Mb 0.0% Rows 00:01 192Mb 37.0% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching MSM5FZA2_nonchimeric.fa, 0.0% matched 00:01 728Mb 100.0% Searching MSM5FZA2_nonchimeric.fa, 84.1% matched Total reads: 560851 Total joined: 53820 Average join len: 13.00 Stdev join len: 5.29 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 68.1% passed 53820 FASTQ recs (53.8k) 36672 Converted (36.7k, 68.1%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZA2_truncated.fa 00:00 47Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZA2_truncated.fa 00:00 26Mb 34735 seqs, 20007 uniques, 18409 singletons (92.0%) 00:00 26Mb Min size 1, median 1, max 1261, avg 1.74 00:00 26Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZA2_derep.fa 00:00 26Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZA2_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZA2_derep.fa 00:00 44Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZA2_derep.fa 00:00 10Mb Getting sizes 00:00 10Mb Sorting 1598 sequences 00:00 10Mb 0.1% Writing output 00:00 10Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 72 OTUs, 87 chimeras (5.4%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZA2_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZA2_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:01 45Mb 11.3% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:01 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:01 25Mb 0.1% Masking 00:01 25Mb 100.0% Masking 00:01 26Mb 0.1% Word stats 00:02 26Mb 80.9% Word stats 00:02 26Mb 100.0% Word stats 00:02 26Mb 100.0% Alloc rows 00:02 82Mb 0.1% Build index 00:03 82Mb 80.5% Build index 00:03 82Mb 100.0% Build index 00:03 95Mb 1.4% Search 0/1 chimeras found (0.0%) 00:03 96Mb 100.0% Search 3/72 chimeras found (4.2%) 00:03 96Mb 1.4% Writing 69 non-chimeras 00:03 96Mb 100.0% Writing 69 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZA2_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5FZA2_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5FZA2_join.fq, 0.0% matched 00:01 54Mb 33.7% Searching MSM5FZA2_join.fq, 67.1% matched 00:02 54Mb 88.4% Searching MSM5FZA2_join.fq, 64.2% matched 00:02 54Mb 100.0% Searching MSM5FZA2_join.fq, 64.8% matched 00:00 3.3Mb 0.0% Rows 00:01 440Mb 78.0% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:02 709Mb 0.1% Searching MSM5FZA2_nonchimeric.fa, 0.0% matched 00:02 727Mb 100.0% Searching MSM5FZA2_nonchimeric.fa, 84.1% matched