Total reads: 24320 Total joined: 3273 Average join len: 11.86 Stdev join len: 5.49 00:00 47Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 79.8% passed 3273 FASTQ recs (3273) 2611 Converted (2611, 79.8%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLD8_truncated.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLD8_truncated.fa 00:00 18Mb 2465 seqs, 1265 uniques, 1132 singletons (89.5%) 00:00 18Mb Min size 1, median 1, max 252, avg 1.95 00:00 18Mb 0.1% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLD8_derep.fa 00:00 18Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLD8_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLD8_derep.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLD8_derep.fa 00:00 6.2Mb Getting sizes 00:00 6.2Mb Sorting 133 sequences 00:00 6.2Mb 0.8% Writing output 00:00 6.2Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 30 OTUs, 0 chimeras (0.0%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLD8_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLD8_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:01 58Mb 94.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:01 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:01 25Mb 0.1% Masking 00:01 25Mb 100.0% Masking 00:01 26Mb 0.1% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 6.2% Build index 00:03 82Mb 88.4% Build index 00:03 82Mb 100.0% Build index 00:03 95Mb 3.2% Search 0/1 chimeras found (0.0%) 00:03 96Mb 100.0% Search 0/30 chimeras found (0.0%) 00:03 96Mb 3.3% Writing 30 non-chimeras 00:03 96Mb 100.0% Writing 30 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLD8_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLD8_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5LLD8_join.fq, 0.0% matched 00:00 54Mb 100.0% Searching MSM5LLD8_join.fq, 73.1% matched 00:00 3.3Mb 0.0% Rows 00:01 331Mb 60.9% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching MSM5LLD8_nonchimeric.fa, 0.0% matched 00:02 727Mb 77.0% Searching MSM5LLD8_nonchimeric.fa, 95.2% matched 00:02 727Mb 100.0% Searching MSM5LLD8_nonchimeric.fa, 96.7% matched Total reads: 24320 Total joined: 3273 Average join len: 11.86 Stdev join len: 5.49 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 79.8% passed 3273 FASTQ recs (3273) 2611 Converted (2611, 79.8%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLD8_truncated.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLD8_truncated.fa 00:00 18Mb 2465 seqs, 1265 uniques, 1132 singletons (89.5%) 00:00 18Mb Min size 1, median 1, max 252, avg 1.95 00:00 18Mb 0.1% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLD8_derep.fa 00:00 18Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLD8_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLD8_derep.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLD8_derep.fa 00:00 6.2Mb Getting sizes 00:00 6.2Mb Sorting 133 sequences 00:00 6.2Mb 0.8% Writing output 00:00 6.2Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 30 OTUs, 0 chimeras (0.0%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLD8_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLD8_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:01 25Mb 94.3% Masking 00:01 25Mb 100.0% Masking 00:01 26Mb 0.1% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 47.5% Build index 00:02 82Mb 100.0% Build index 00:02 93Mb 3.2% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 0/30 chimeras found (0.0%) 00:02 96Mb 3.3% Writing 30 non-chimeras 00:02 96Mb 100.0% Writing 30 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLD8_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLD8_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5LLD8_join.fq, 0.0% matched 00:00 54Mb 100.0% Searching MSM5LLD8_join.fq, 73.1% matched 00:00 3.3Mb 0.0% Rows 00:01 405Mb 71.7% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching MSM5LLD8_nonchimeric.fa, 0.0% matched 00:01 727Mb 100.0% Searching MSM5LLD8_nonchimeric.fa, 96.7% matched Total reads: 24320 Total joined: 3273 Average join len: 11.86 Stdev join len: 5.49 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 79.8% passed 3273 FASTQ recs (3273) 2611 Converted (2611, 79.8%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLD8_truncated.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLD8_truncated.fa 00:00 18Mb 2465 seqs, 1265 uniques, 1132 singletons (89.5%) 00:00 18Mb Min size 1, median 1, max 252, avg 1.95 00:00 18Mb 0.1% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLD8_derep.fa 00:00 18Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLD8_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLD8_derep.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLD8_derep.fa 00:00 6.2Mb Getting sizes 00:00 6.2Mb Sorting 133 sequences 00:00 6.2Mb 0.8% Writing output 00:00 6.2Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 30 OTUs, 0 chimeras (0.0%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLD8_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLD8_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:01 44Mb 8.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:01 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:01 25Mb 0.1% Masking 00:01 25Mb 100.0% Masking 00:01 26Mb 0.1% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 8.7% Build index 00:02 82Mb 100.0% Build index 00:02 95Mb 3.2% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 0/30 chimeras found (0.0%) 00:02 96Mb 3.3% Writing 30 non-chimeras 00:02 96Mb 100.0% Writing 30 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLD8_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLD8_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5LLD8_join.fq, 0.0% matched 00:01 54Mb 72.0% Searching MSM5LLD8_join.fq, 66.8% matched 00:01 54Mb 100.0% Searching MSM5LLD8_join.fq, 73.2% matched 00:00 3.3Mb 0.0% Rows 00:00 532Mb 100.0% Rows 00:00 532Mb Reading pointers...done. 00:00 534Mb Reading seqs...done. 00:00 709Mb 0.1% Searching MSM5LLD8_nonchimeric.fa, 0.0% matched 00:00 727Mb 100.0% Searching MSM5LLD8_nonchimeric.fa, 96.7% matched Total reads: 24320 Total joined: 3273 Average join len: 11.86 Stdev join len: 5.49 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 79.8% passed 3273 FASTQ recs (3273) 2611 Converted (2611, 79.8%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLD8_truncated.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLD8_truncated.fa 00:00 18Mb 2465 seqs, 1265 uniques, 1132 singletons (89.5%) 00:00 18Mb Min size 1, median 1, max 252, avg 1.95 00:00 18Mb 0.1% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLD8_derep.fa 00:00 18Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLD8_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLD8_derep.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLD8_derep.fa 00:00 6.2Mb Getting sizes 00:00 6.2Mb Sorting 133 sequences 00:00 6.2Mb 0.8% Writing output 00:00 6.2Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 30 OTUs, 0 chimeras (0.0%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLD8_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLD8_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:01 26Mb 21.1% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 40.2% Build index 00:02 82Mb 100.0% Build index 00:02 95Mb 3.2% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 0/30 chimeras found (0.0%) 00:02 96Mb 3.3% Writing 30 non-chimeras 00:02 96Mb 100.0% Writing 30 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLD8_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLD8_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5LLD8_join.fq, 0.0% matched 00:00 54Mb 100.0% Searching MSM5LLD8_join.fq, 73.1% matched 00:01 3.3Mb 0.0% Rows 00:02 165Mb 30.7% Rows 00:03 292Mb 54.7% Rows 00:04 469Mb 85.9% Rows 00:04 532Mb 100.0% Rows 00:04 532Mb Reading pointers...done. 00:04 534Mb Reading seqs...done. 00:05 709Mb 0.1% Searching MSM5LLD8_nonchimeric.fa, 0.0% matched 00:05 727Mb 100.0% Searching MSM5LLD8_nonchimeric.fa, 96.7% matched