Total reads: 295246 Total joined: 23857 Average join len: 15.04 Stdev join len: 4.20 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 64.3% passed 23857 FASTQ recs (23.9k) 15334 Converted (15.3k, 64.3%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLEN_truncated.fa 00:00 43Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLEN_truncated.fa 00:00 22Mb 14509 seqs, 6190 uniques, 5474 singletons (88.4%) 00:00 22Mb Min size 1, median 1, max 1601, avg 2.34 00:00 22Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLEN_derep.fa 00:00 22Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLEN_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLEN_derep.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLEN_derep.fa 00:00 7.3Mb Getting sizes 00:00 7.3Mb Sorting 716 sequences 00:00 7.3Mb 0.1% Writing output 00:00 7.3Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 32 OTUs, 8 chimeras (1.1%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLEN_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLEN_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:01 45Mb 12.6% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:01 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:01 25Mb 0.1% Masking 00:01 25Mb 100.0% Masking 00:01 26Mb 0.1% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 1.3% Build index 00:02 82Mb 100.0% Build index 00:02 93Mb 3.0% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 0/32 chimeras found (0.0%) 00:02 96Mb 3.1% Writing 32 non-chimeras 00:02 96Mb 100.0% Writing 32 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLEN_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLEN_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5LLEN_join.fq, 0.0% matched 00:01 54Mb 4.3% Searching MSM5LLEN_join.fq, 91.5% matched 00:01 55Mb 100.0% Searching MSM5LLEN_join.fq, 77.1% matched 00:00 3.3Mb 0.0% Rows 00:01 297Mb 55.7% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching MSM5LLEN_nonchimeric.fa, 0.0% matched 00:01 727Mb 100.0% Searching MSM5LLEN_nonchimeric.fa, 96.9% matched Total reads: 295246 Total joined: 23857 Average join len: 15.04 Stdev join len: 4.20 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 64.3% passed 23857 FASTQ recs (23.9k) 15334 Converted (15.3k, 64.3%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLEN_truncated.fa 00:00 43Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLEN_truncated.fa 00:00 22Mb 14509 seqs, 6190 uniques, 5474 singletons (88.4%) 00:00 22Mb Min size 1, median 1, max 1601, avg 2.34 00:00 22Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLEN_derep.fa 00:01 22Mb 6.3% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLEN_derep.fa 00:01 22Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLEN_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLEN_derep.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLEN_derep.fa 00:00 7.3Mb Getting sizes 00:00 7.3Mb Sorting 716 sequences 00:00 7.3Mb 0.1% Writing output 00:00 7.3Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 32 OTUs, 8 chimeras (1.1%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLEN_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLEN_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:01 26Mb 80.7% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:01 82Mb 100.0% Build index 00:01 94Mb 3.0% Search 0/1 chimeras found (0.0%) 00:01 96Mb 100.0% Search 0/32 chimeras found (0.0%) 00:01 96Mb 3.1% Writing 32 non-chimeras 00:01 96Mb 100.0% Writing 32 non-chimeras 00:01 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLEN_nonchimeric.fa 00:01 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLEN_nonchimeric.fa 00:01 6.1Mb 0.1% Masking 00:01 6.1Mb 100.0% Masking 00:01 6.9Mb 0.1% Word stats 00:01 6.9Mb 100.0% Word stats 00:01 6.9Mb 100.0% Alloc rows 00:01 6.9Mb 0.1% Build index 00:01 6.9Mb 100.0% Build index 00:01 40Mb 0.1% Searching MSM5LLEN_join.fq, 0.0% matched 00:01 55Mb 100.0% Searching MSM5LLEN_join.fq, 77.1% matched 00:00 3.3Mb 0.0% Rows 00:01 467Mb 85.4% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching MSM5LLEN_nonchimeric.fa, 0.0% matched 00:01 727Mb 100.0% Searching MSM5LLEN_nonchimeric.fa, 96.9% matched Total reads: 295246 Total joined: 23857 Average join len: 15.04 Stdev join len: 4.20 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 64.3% passed 23857 FASTQ recs (23.9k) 15334 Converted (15.3k, 64.3%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLEN_truncated.fa 00:00 43Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLEN_truncated.fa 00:00 22Mb 14509 seqs, 6190 uniques, 5474 singletons (88.4%) 00:00 22Mb Min size 1, median 1, max 1601, avg 2.34 00:00 22Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLEN_derep.fa 00:00 22Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLEN_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLEN_derep.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLEN_derep.fa 00:00 7.3Mb Getting sizes 00:00 7.3Mb Sorting 716 sequences 00:00 7.3Mb 0.1% Writing output 00:00 7.3Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 32 OTUs, 8 chimeras (1.1%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLEN_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLEN_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:01 25Mb 52.4% Masking 00:01 25Mb 100.0% Masking 00:01 26Mb 0.1% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 38.7% Build index 00:02 82Mb 100.0% Build index 00:02 95Mb 3.0% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 0/32 chimeras found (0.0%) 00:02 96Mb 3.1% Writing 32 non-chimeras 00:02 96Mb 100.0% Writing 32 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLEN_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLEN_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5LLEN_join.fq, 0.0% matched 00:01 55Mb 69.4% Searching MSM5LLEN_join.fq, 80.7% matched 00:01 55Mb 100.0% Searching MSM5LLEN_join.fq, 77.1% matched 00:00 3.3Mb 0.0% Rows 00:00 532Mb 100.0% Rows 00:00 532Mb Reading pointers...done. 00:00 534Mb Reading seqs...done. 00:00 709Mb 0.1% Searching MSM5LLEN_nonchimeric.fa, 0.0% matched 00:00 727Mb 100.0% Searching MSM5LLEN_nonchimeric.fa, 96.9% matched Total reads: 295246 Total joined: 23857 Average join len: 15.04 Stdev join len: 4.20 00:00 47Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 64.3% passed 23857 FASTQ recs (23.9k) 15334 Converted (15.3k, 64.3%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLEN_truncated.fa 00:00 43Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLEN_truncated.fa 00:00 22Mb 14509 seqs, 6190 uniques, 5474 singletons (88.4%) 00:00 22Mb Min size 1, median 1, max 1601, avg 2.34 00:00 22Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLEN_derep.fa 00:00 22Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLEN_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLEN_derep.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLEN_derep.fa 00:00 7.3Mb Getting sizes 00:00 7.3Mb Sorting 716 sequences 00:00 7.3Mb 0.1% Writing output 00:00 7.3Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 32 OTUs, 8 chimeras (1.1%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLEN_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLEN_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:01 26Mb 20.4% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 35.6% Build index 00:02 82Mb 100.0% Build index 00:02 93Mb 3.0% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 0/32 chimeras found (0.0%) 00:02 96Mb 3.1% Writing 32 non-chimeras 00:02 96Mb 100.0% Writing 32 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLEN_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLEN_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5LLEN_join.fq, 0.0% matched 00:01 55Mb 14.5% Searching MSM5LLEN_join.fq, 79.0% matched 00:01 55Mb 100.0% Searching MSM5LLEN_join.fq, 77.1% matched 00:00 3.3Mb 0.0% Rows 00:01 6.4Mb 0.7% Rows 00:02 468Mb 85.6% Rows 00:02 532Mb 100.0% Rows 00:02 532Mb Reading pointers...done. 00:02 534Mb Reading seqs...done. 00:02 709Mb 0.1% Searching MSM5LLEN_nonchimeric.fa, 0.0% matched 00:02 727Mb 100.0% Searching MSM5LLEN_nonchimeric.fa, 96.9% matched