Total reads: 260433 Total joined: 19714 Average join len: 10.32 Stdev join len: 5.37 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 72.6% passed 19714 FASTQ recs (19.7k) 14322 Converted (14.3k, 72.6%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFK_truncated.fa 00:00 43Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFK_truncated.fa 00:00 21Mb 13548 seqs, 8938 uniques, 8329 singletons (93.2%) 00:00 21Mb Min size 1, median 1, max 498, avg 1.52 00:00 21Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFK_derep.fa 00:00 21Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFK_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFK_derep.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFK_derep.fa 00:00 7.8Mb Getting sizes 00:01 7.8Mb Sorting 609 sequences 00:01 7.8Mb 0.2% Writing output 00:01 7.8Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 35 OTUs, 7 chimeras (1.1%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFK_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFK_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:01 26Mb 93.6% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:01 82Mb 100.0% Build index 00:01 94Mb 2.8% Search 0/1 chimeras found (0.0%) 00:01 96Mb 100.0% Search 1/35 chimeras found (2.9%) 00:01 96Mb 2.9% Writing 34 non-chimeras 00:01 96Mb 100.0% Writing 34 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFK_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFK_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5LLFK_join.fq, 0.0% matched 00:01 54Mb 3.1% Searching MSM5LLFK_join.fq, 77.9% matched 00:01 54Mb 100.0% Searching MSM5LLFK_join.fq, 62.1% matched 00:00 3.3Mb 0.0% Rows 00:01 329Mb 60.6% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching MSM5LLFK_nonchimeric.fa, 0.0% matched 00:01 727Mb 100.0% Searching MSM5LLFK_nonchimeric.fa, 97.1% matched Total reads: 260433 Total joined: 19714 Average join len: 10.32 Stdev join len: 5.37 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 72.6% passed 19714 FASTQ recs (19.7k) 14322 Converted (14.3k, 72.6%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFK_truncated.fa 00:00 43Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFK_truncated.fa 00:00 21Mb 13548 seqs, 8938 uniques, 8329 singletons (93.2%) 00:00 21Mb Min size 1, median 1, max 498, avg 1.52 00:00 21Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFK_derep.fa 00:00 21Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFK_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFK_derep.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFK_derep.fa 00:00 7.8Mb Getting sizes 00:00 7.8Mb Sorting 609 sequences 00:00 7.8Mb 0.2% Writing output 00:00 7.8Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 35 OTUs, 7 chimeras (1.1%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFK_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFK_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:01 26Mb 25.2% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 39.5% Build index 00:02 82Mb 100.0% Build index 00:02 93Mb 2.8% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 1/35 chimeras found (2.9%) 00:02 96Mb 2.9% Writing 34 non-chimeras 00:02 96Mb 100.0% Writing 34 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFK_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFK_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5LLFK_join.fq, 0.0% matched 00:01 54Mb 16.8% Searching MSM5LLFK_join.fq, 61.0% matched 00:01 54Mb 100.0% Searching MSM5LLFK_join.fq, 62.1% matched 00:00 3.3Mb 0.0% Rows 00:01 146Mb 26.5% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:02 709Mb 0.1% Searching MSM5LLFK_nonchimeric.fa, 0.0% matched 00:02 727Mb 100.0% Searching MSM5LLFK_nonchimeric.fa, 97.1% matched Total reads: 260433 Total joined: 19714 Average join len: 10.32 Stdev join len: 5.37 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 72.6% passed 19714 FASTQ recs (19.7k) 14322 Converted (14.3k, 72.6%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFK_truncated.fa 00:00 43Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFK_truncated.fa 00:00 21Mb 13548 seqs, 8938 uniques, 8329 singletons (93.2%) 00:00 21Mb Min size 1, median 1, max 498, avg 1.52 00:00 21Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFK_derep.fa 00:00 21Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFK_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFK_derep.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFK_derep.fa 00:00 7.8Mb Getting sizes 00:00 7.8Mb Sorting 609 sequences 00:00 7.8Mb 0.2% Writing output 00:00 7.8Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 35 OTUs, 7 chimeras (1.1%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFK_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFK_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:01 26Mb 46.2% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 73.7% Build index 00:02 82Mb 100.0% Build index 00:02 94Mb 2.8% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 1/35 chimeras found (2.9%) 00:02 96Mb 2.9% Writing 34 non-chimeras 00:02 96Mb 100.0% Writing 34 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFK_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFK_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5LLFK_join.fq, 0.0% matched 00:00 54Mb 100.0% Searching MSM5LLFK_join.fq, 62.2% matched 00:00 3.3Mb 0.0% Rows 00:01 23Mb 3.5% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching MSM5LLFK_nonchimeric.fa, 0.0% matched 00:01 727Mb 100.0% Searching MSM5LLFK_nonchimeric.fa, 97.1% matched Total reads: 260433 Total joined: 19714 Average join len: 10.32 Stdev join len: 5.37 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 72.6% passed 19714 FASTQ recs (19.7k) 14322 Converted (14.3k, 72.6%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFK_truncated.fa 00:00 43Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFK_truncated.fa 00:00 21Mb 13548 seqs, 8938 uniques, 8329 singletons (93.2%) 00:00 21Mb Min size 1, median 1, max 498, avg 1.52 00:00 21Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFK_derep.fa 00:00 21Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFK_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFK_derep.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFK_derep.fa 00:00 7.8Mb Getting sizes 00:00 7.8Mb Sorting 609 sequences 00:00 7.8Mb 0.2% Writing output 00:00 7.8Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 35 OTUs, 7 chimeras (1.1%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFK_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFK_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:01 26Mb 7.5% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 46.4% Build index 00:02 82Mb 100.0% Build index 00:02 95Mb 2.8% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 1/35 chimeras found (2.9%) 00:02 96Mb 2.9% Writing 34 non-chimeras 00:02 96Mb 100.0% Writing 34 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFK_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFK_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5LLFK_join.fq, 0.0% matched 00:01 54Mb 55.6% Searching MSM5LLFK_join.fq, 66.4% matched 00:01 54Mb 100.0% Searching MSM5LLFK_join.fq, 62.1% matched 00:00 3.3Mb 0.0% Rows 00:01 396Mb 69.8% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching MSM5LLFK_nonchimeric.fa, 0.0% matched 00:01 727Mb 100.0% Searching MSM5LLFK_nonchimeric.fa, 97.1% matched