Total reads: 348648 Total joined: 25976 Average join len: 14.64 Stdev join len: 4.51 00:00 47Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 64.8% passed 25976 FASTQ recs (26.0k) 16832 Converted (16.8k, 64.8%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFS_truncated.fa 00:00 43Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFS_truncated.fa 00:00 22Mb 15962 seqs, 7673 uniques, 6967 singletons (90.8%) 00:00 22Mb Min size 1, median 1, max 1426, avg 2.08 00:00 22Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFS_derep.fa 00:00 22Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFS_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFS_derep.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFS_derep.fa 00:00 7.7Mb Getting sizes 00:00 7.7Mb Sorting 706 sequences 00:00 7.7Mb 0.1% Writing output 00:00 7.7Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 40 OTUs, 6 chimeras (0.8%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFS_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFS_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:01 26Mb 50.9% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 73.4% Build index 00:02 82Mb 100.0% Build index 00:02 93Mb 2.4% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 0/40 chimeras found (0.0%) 00:02 96Mb 2.5% Writing 40 non-chimeras 00:02 96Mb 100.0% Writing 40 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFS_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFS_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5LLFS_join.fq, 0.0% matched 00:01 55Mb 62.2% Searching MSM5LLFS_join.fq, 76.9% matched 00:01 55Mb 100.0% Searching MSM5LLFS_join.fq, 73.8% matched 00:00 3.3Mb 0.0% Rows 00:00 532Mb 100.0% Rows 00:00 532Mb Reading pointers...done. 00:00 534Mb Reading seqs...done. 00:00 709Mb 0.1% Searching MSM5LLFS_nonchimeric.fa, 0.0% matched 00:01 727Mb 70.3% Searching MSM5LLFS_nonchimeric.fa, 100.0% matched 00:01 727Mb 100.0% Searching MSM5LLFS_nonchimeric.fa, 97.5% matched Total reads: 348648 Total joined: 25976 Average join len: 14.64 Stdev join len: 4.51 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 64.8% passed 25976 FASTQ recs (26.0k) 16832 Converted (16.8k, 64.8%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFS_truncated.fa 00:00 43Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFS_truncated.fa 00:00 22Mb 15962 seqs, 7673 uniques, 6967 singletons (90.8%) 00:00 22Mb Min size 1, median 1, max 1426, avg 2.08 00:00 22Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFS_derep.fa 00:00 22Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFS_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFS_derep.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFS_derep.fa 00:00 7.7Mb Getting sizes 00:00 7.7Mb Sorting 706 sequences 00:00 7.7Mb 0.1% Writing output 00:00 7.7Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 40 OTUs, 6 chimeras (0.8%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFS_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFS_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:01 43Mb 1.9% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:01 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:01 25Mb 0.1% Masking 00:01 25Mb 100.0% Masking 00:01 26Mb 0.1% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 0.2% Build index 00:02 82Mb 100.0% Build index 00:02 93Mb 2.4% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 0/40 chimeras found (0.0%) 00:02 96Mb 2.5% Writing 40 non-chimeras 00:02 96Mb 100.0% Writing 40 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFS_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFS_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5LLFS_join.fq, 0.0% matched 00:01 54Mb 9.9% Searching MSM5LLFS_join.fq, 80.1% matched 00:01 54Mb 100.0% Searching MSM5LLFS_join.fq, 73.8% matched 00:00 3.3Mb 0.0% Rows 00:01 395Mb 69.6% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching MSM5LLFS_nonchimeric.fa, 0.0% matched 00:01 727Mb 100.0% Searching MSM5LLFS_nonchimeric.fa, 97.5% matched Total reads: 348648 Total joined: 25976 Average join len: 14.64 Stdev join len: 4.51 00:00 47Mb 0.1% Filtering 00:01 48Mb 0.2% Filtering, 0.0% passed 00:01 15Mb 100.0% Filtering, 64.8% passed 25976 FASTQ recs (26.0k) 16832 Converted (16.8k, 64.8%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFS_truncated.fa 00:00 43Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFS_truncated.fa 00:00 22Mb 15962 seqs, 7673 uniques, 6967 singletons (90.8%) 00:00 22Mb Min size 1, median 1, max 1426, avg 2.08 00:00 22Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFS_derep.fa 00:00 22Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFS_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFS_derep.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFS_derep.fa 00:00 7.7Mb Getting sizes 00:00 7.7Mb Sorting 706 sequences 00:00 7.7Mb 0.1% Writing output 00:00 7.7Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 40 OTUs, 6 chimeras (0.8%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFS_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFS_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:01 25Mb 54.9% Masking 00:01 25Mb 100.0% Masking 00:01 26Mb 0.1% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 33.5% Build index 00:02 82Mb 100.0% Build index 00:02 93Mb 2.4% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 0/40 chimeras found (0.0%) 00:02 96Mb 2.5% Writing 40 non-chimeras 00:02 96Mb 100.0% Writing 40 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFS_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFS_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5LLFS_join.fq, 0.0% matched 00:01 54Mb 16.0% Searching MSM5LLFS_join.fq, 70.5% matched 00:02 54Mb 97.3% Searching MSM5LLFS_join.fq, 73.5% matched 00:02 54Mb 100.0% Searching MSM5LLFS_join.fq, 73.8% matched 00:00 3.3Mb 0.0% Rows 00:00 532Mb 100.0% Rows 00:00 532Mb Reading pointers...done. 00:00 534Mb Reading seqs...done. 00:00 709Mb 0.1% Searching MSM5LLFS_nonchimeric.fa, 0.0% matched 00:00 727Mb 100.0% Searching MSM5LLFS_nonchimeric.fa, 97.5% matched Total reads: 348648 Total joined: 25976 Average join len: 14.64 Stdev join len: 4.51 00:00 47Mb 0.1% Filtering 00:01 48Mb 28.2% Filtering, 100.0% passed 00:01 15Mb 100.0% Filtering, 64.8% passed 25976 FASTQ recs (26.0k) 16832 Converted (16.8k, 64.8%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFS_truncated.fa 00:00 43Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFS_truncated.fa 00:00 22Mb 15962 seqs, 7673 uniques, 6967 singletons (90.8%) 00:00 22Mb Min size 1, median 1, max 1426, avg 2.08 00:00 22Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFS_derep.fa 00:00 22Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFS_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFS_derep.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFS_derep.fa 00:00 7.7Mb Getting sizes 00:00 7.7Mb Sorting 706 sequences 00:00 7.7Mb 0.1% Writing output 00:00 7.7Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 40 OTUs, 6 chimeras (0.8%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFS_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFS_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:01 25Mb 29.0% Masking 00:01 25Mb 100.0% Masking 00:01 26Mb 0.1% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 22.2% Build index 00:02 82Mb 100.0% Build index 00:02 93Mb 2.4% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 0/40 chimeras found (0.0%) 00:02 96Mb 2.5% Writing 40 non-chimeras 00:02 96Mb 100.0% Writing 40 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFS_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFS_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5LLFS_join.fq, 0.0% matched 00:01 53Mb 1.0% Searching MSM5LLFS_join.fq, 87.7% matched 00:02 54Mb 77.3% Searching MSM5LLFS_join.fq, 75.8% matched 00:02 54Mb 100.0% Searching MSM5LLFS_join.fq, 73.8% matched 00:00 3.3Mb 0.0% Rows 00:01 389Mb 68.8% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching MSM5LLFS_nonchimeric.fa, 0.0% matched 00:01 727Mb 100.0% Searching MSM5LLFS_nonchimeric.fa, 97.5% matched