Total reads: 167050 Total joined: 5255 Average join len: 11.92 Stdev join len: 5.48 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 70.9% passed 5255 FASTQ recs (5255) 3725 Converted (3725, 70.9%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFU_truncated.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFU_truncated.fa 00:00 19Mb 3530 seqs, 2085 uniques, 1913 singletons (91.8%) 00:00 19Mb Min size 1, median 1, max 202, avg 1.69 00:00 19Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFU_derep.fa 00:00 19Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFU_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFU_derep.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFU_derep.fa 00:00 6.5Mb Getting sizes 00:00 6.5Mb Sorting 172 sequences 00:00 6.5Mb 0.6% Writing output 00:00 6.5Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 27 OTUs, 6 chimeras (3.5%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFU_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFU_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:01 25Mb 96.5% Masking 00:01 25Mb 100.0% Masking 00:01 26Mb 0.1% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 53.5% Build index 00:02 82Mb 100.0% Build index 00:02 94Mb 3.6% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 0/27 chimeras found (0.0%) 00:02 96Mb 3.7% Writing 27 non-chimeras 00:02 96Mb 100.0% Writing 27 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFU_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFU_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5LLFU_join.fq, 0.0% matched 00:00 55Mb 100.0% Searching MSM5LLFU_join.fq, 66.7% matched 00:00 3.3Mb 0.0% Rows 00:01 352Mb 63.9% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching MSM5LLFU_nonchimeric.fa, 0.0% matched 00:01 727Mb 100.0% Searching MSM5LLFU_nonchimeric.fa, 96.3% matched Total reads: 167050 Total joined: 5255 Average join len: 11.92 Stdev join len: 5.48 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 70.9% passed 5255 FASTQ recs (5255) 3725 Converted (3725, 70.9%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFU_truncated.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFU_truncated.fa 00:00 19Mb 3530 seqs, 2085 uniques, 1913 singletons (91.8%) 00:00 19Mb Min size 1, median 1, max 202, avg 1.69 00:00 19Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFU_derep.fa 00:00 19Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFU_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFU_derep.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFU_derep.fa 00:00 6.5Mb Getting sizes 00:00 6.5Mb Sorting 172 sequences 00:00 6.5Mb 0.6% Writing output 00:00 6.5Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 27 OTUs, 6 chimeras (3.5%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFU_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFU_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:01 26Mb 77.5% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:01 82Mb 100.0% Build index 00:01 94Mb 3.6% Search 0/1 chimeras found (0.0%) 00:02 96Mb 46.4% Search 0/13 chimeras found (0.0%) 00:02 96Mb 100.0% Search 0/27 chimeras found (0.0%) 00:02 96Mb 3.7% Writing 27 non-chimeras 00:02 96Mb 100.0% Writing 27 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFU_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFU_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5LLFU_join.fq, 0.0% matched 00:00 55Mb 100.0% Searching MSM5LLFU_join.fq, 66.7% matched 00:00 3.3Mb 0.0% Rows 00:00 532Mb 100.0% Rows 00:00 532Mb Reading pointers...done. 00:00 534Mb Reading seqs...done. 00:00 709Mb 0.1% Searching MSM5LLFU_nonchimeric.fa, 0.0% matched 00:00 727Mb 100.0% Searching MSM5LLFU_nonchimeric.fa, 96.3% matched Total reads: 167050 Total joined: 5255 Average join len: 11.92 Stdev join len: 5.48 00:00 47Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 70.9% passed 5255 FASTQ recs (5255) 3725 Converted (3725, 70.9%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFU_truncated.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFU_truncated.fa 00:01 19Mb 3530 seqs, 2085 uniques, 1913 singletons (91.8%) 00:01 19Mb Min size 1, median 1, max 202, avg 1.69 00:01 19Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFU_derep.fa 00:01 19Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFU_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFU_derep.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFU_derep.fa 00:00 6.5Mb Getting sizes 00:00 6.5Mb Sorting 172 sequences 00:00 6.5Mb 0.6% Writing output 00:00 6.5Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 27 OTUs, 6 chimeras (3.5%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFU_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFU_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:01 26Mb 80.9% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 81.8% Build index 00:02 82Mb 100.0% Build index 00:02 93Mb 3.6% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 0/27 chimeras found (0.0%) 00:02 96Mb 3.7% Writing 27 non-chimeras 00:02 96Mb 100.0% Writing 27 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFU_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFU_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5LLFU_join.fq, 0.0% matched 00:00 55Mb 100.0% Searching MSM5LLFU_join.fq, 66.7% matched 00:00 3.3Mb 0.0% Rows 00:01 371Mb 66.4% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching MSM5LLFU_nonchimeric.fa, 0.0% matched 00:01 727Mb 100.0% Searching MSM5LLFU_nonchimeric.fa, 96.3% matched Total reads: 167050 Total joined: 5255 Average join len: 11.92 Stdev join len: 5.48 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 70.9% passed 5255 FASTQ recs (5255) 3725 Converted (3725, 70.9%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFU_truncated.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFU_truncated.fa 00:00 19Mb 3530 seqs, 2085 uniques, 1913 singletons (91.8%) 00:00 19Mb Min size 1, median 1, max 202, avg 1.69 00:00 19Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFU_derep.fa 00:00 19Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFU_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFU_derep.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFU_derep.fa 00:00 6.5Mb Getting sizes 00:00 6.5Mb Sorting 172 sequences 00:00 6.5Mb 0.6% Writing output 00:00 6.5Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 27 OTUs, 6 chimeras (3.5%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFU_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFU_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:01 25Mb 92.3% Masking 00:01 25Mb 100.0% Masking 00:01 26Mb 0.1% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 34.2% Build index 00:02 82Mb 100.0% Build index 00:02 95Mb 3.6% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 0/27 chimeras found (0.0%) 00:02 96Mb 3.7% Writing 27 non-chimeras 00:02 96Mb 100.0% Writing 27 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFU_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLFU_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5LLFU_join.fq, 0.0% matched 00:00 55Mb 100.0% Searching MSM5LLFU_join.fq, 66.7% matched 00:00 3.3Mb 0.0% Rows 00:01 47Mb 7.3% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:02 709Mb 0.1% Searching MSM5LLFU_nonchimeric.fa, 0.0% matched 00:02 727Mb 100.0% Searching MSM5LLFU_nonchimeric.fa, 96.3% matched