Total reads: 399670 Total joined: 19008 Average join len: 12.34 Stdev join len: 5.42 00:00 47Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 69.9% passed 19008 FASTQ recs (19.0k) 13293 Converted (13.3k, 69.9%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGT_truncated.fa 00:00 42Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGT_truncated.fa 00:00 21Mb 12604 seqs, 8342 uniques, 7796 singletons (93.5%) 00:00 21Mb Min size 1, median 1, max 483, avg 1.51 00:00 21Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGT_derep.fa 00:00 21Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGT_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGT_derep.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGT_derep.fa 00:00 7.7Mb Getting sizes 00:00 7.7Mb Sorting 546 sequences 00:00 7.7Mb 0.2% Writing output 00:00 7.7Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 56 OTUs, 3 chimeras (0.5%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGT_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGT_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:01 25Mb 41.0% Masking 00:01 25Mb 100.0% Masking 00:01 26Mb 0.1% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 32.7% Build index 00:02 82Mb 100.0% Build index 00:02 93Mb 1.8% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 1/56 chimeras found (1.8%) 00:02 96Mb 1.8% Writing 55 non-chimeras 00:02 96Mb 100.0% Writing 55 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGT_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGT_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5LLGT_join.fq, 0.0% matched 00:01 55Mb 25.6% Searching MSM5LLGT_join.fq, 56.0% matched 00:01 55Mb 100.0% Searching MSM5LLGT_join.fq, 61.9% matched 00:00 3.3Mb 0.0% Rows 00:01 253Mb 48.0% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching MSM5LLGT_nonchimeric.fa, 0.0% matched 00:01 727Mb 100.0% Searching MSM5LLGT_nonchimeric.fa, 96.4% matched Total reads: 399670 Total joined: 19008 Average join len: 12.34 Stdev join len: 5.42 00:00 47Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 69.9% passed 19008 FASTQ recs (19.0k) 13293 Converted (13.3k, 69.9%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGT_truncated.fa 00:00 42Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGT_truncated.fa 00:00 21Mb 12604 seqs, 8342 uniques, 7796 singletons (93.5%) 00:00 21Mb Min size 1, median 1, max 483, avg 1.51 00:00 21Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGT_derep.fa 00:00 21Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGT_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGT_derep.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGT_derep.fa 00:00 7.7Mb Getting sizes 00:00 7.7Mb Sorting 546 sequences 00:00 7.7Mb 0.2% Writing output 00:00 7.7Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 56 OTUs, 3 chimeras (0.5%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGT_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGT_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:01 40Mb 0.2% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:01 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:01 25Mb 0.1% Masking 00:01 25Mb 100.0% Masking 00:01 26Mb 0.1% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 0.2% Build index 00:03 82Mb 63.1% Build index 00:03 82Mb 100.0% Build index 00:03 94Mb 1.8% Search 0/1 chimeras found (0.0%) 00:03 96Mb 100.0% Search 1/56 chimeras found (1.8%) 00:03 96Mb 1.8% Writing 55 non-chimeras 00:03 96Mb 100.0% Writing 55 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGT_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGT_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5LLGT_join.fq, 0.0% matched 00:00 55Mb 100.0% Searching MSM5LLGT_join.fq, 62.0% matched 00:00 3.3Mb 0.0% Rows 00:00 532Mb 100.0% Rows 00:00 532Mb Reading pointers...done. 00:00 534Mb Reading seqs...done. 00:00 709Mb 0.1% Searching MSM5LLGT_nonchimeric.fa, 0.0% matched 00:01 727Mb 22.1% Searching MSM5LLGT_nonchimeric.fa, 100.0% matched 00:01 727Mb 100.0% Searching MSM5LLGT_nonchimeric.fa, 96.4% matched Total reads: 399670 Total joined: 19008 Average join len: 12.34 Stdev join len: 5.42 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 69.9% passed 19008 FASTQ recs (19.0k) 13293 Converted (13.3k, 69.9%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGT_truncated.fa 00:00 42Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGT_truncated.fa 00:00 21Mb 12604 seqs, 8342 uniques, 7796 singletons (93.5%) 00:00 21Mb Min size 1, median 1, max 483, avg 1.51 00:00 21Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGT_derep.fa 00:00 21Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGT_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGT_derep.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGT_derep.fa 00:00 7.7Mb Getting sizes 00:00 7.7Mb Sorting 546 sequences 00:00 7.7Mb 0.2% Writing output 00:00 7.7Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 56 OTUs, 3 chimeras (0.5%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGT_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGT_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:01 26Mb 33.5% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 69.0% Build index 00:02 82Mb 100.0% Build index 00:02 95Mb 1.8% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 1/56 chimeras found (1.8%) 00:02 96Mb 1.8% Writing 55 non-chimeras 00:02 96Mb 100.0% Writing 55 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGT_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGT_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5LLGT_join.fq, 0.0% matched 00:00 54Mb 100.0% Searching MSM5LLGT_join.fq, 62.0% matched 00:00 3.3Mb 0.0% Rows 00:00 532Mb 100.0% Rows 00:00 532Mb Reading pointers...done. 00:00 534Mb Reading seqs...done. 00:00 709Mb 0.1% Searching MSM5LLGT_nonchimeric.fa, 0.0% matched 00:00 727Mb 100.0% Searching MSM5LLGT_nonchimeric.fa, 96.4% matched Total reads: 399670 Total joined: 19008 Average join len: 12.34 Stdev join len: 5.42 00:00 47Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 69.9% passed 19008 FASTQ recs (19.0k) 13293 Converted (13.3k, 69.9%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGT_truncated.fa 00:00 42Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGT_truncated.fa 00:00 21Mb 12604 seqs, 8342 uniques, 7796 singletons (93.5%) 00:00 21Mb Min size 1, median 1, max 483, avg 1.51 00:00 21Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGT_derep.fa 00:00 21Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGT_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGT_derep.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGT_derep.fa 00:00 7.7Mb Getting sizes 00:00 7.7Mb Sorting 546 sequences 00:00 7.7Mb 0.2% Writing output 00:00 7.7Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 54 OTUs, 6 chimeras (1.1%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGT_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGT_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:01 26Mb 23.2% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 31.1% Build index 00:02 82Mb 100.0% Build index 00:02 93Mb 1.8% Search 0/1 chimeras found (0.0%) 00:03 96Mb 81.8% Search 0/45 chimeras found (0.0%) 00:03 96Mb 100.0% Search 1/54 chimeras found (1.9%) 00:03 96Mb 1.9% Writing 53 non-chimeras 00:03 96Mb 100.0% Writing 53 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGT_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGT_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5LLGT_join.fq, 0.0% matched 00:01 55Mb 83.2% Searching MSM5LLGT_join.fq, 61.2% matched 00:01 55Mb 100.0% Searching MSM5LLGT_join.fq, 61.5% matched 00:00 3.3Mb 0.0% Rows 00:01 485Mb 89.2% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching MSM5LLGT_nonchimeric.fa, 0.0% matched 00:01 727Mb 100.0% Searching MSM5LLGT_nonchimeric.fa, 96.2% matched