Total reads: 229779 Total joined: 18385 Average join len: 15.56 Stdev join len: 3.69 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 64.7% passed 18385 FASTQ recs (18.4k) 11886 Converted (11.9k, 64.7%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGV_truncated.fa 00:00 42Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGV_truncated.fa 00:00 21Mb 11182 seqs, 5268 uniques, 4761 singletons (90.4%) 00:00 21Mb Min size 1, median 1, max 1528, avg 2.12 00:00 21Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGV_derep.fa 00:00 21Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGV_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGV_derep.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGV_derep.fa 00:00 7.2Mb Getting sizes 00:00 7.2Mb Sorting 507 sequences 00:00 7.2Mb 0.2% Writing output 00:00 7.2Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 39 OTUs, 0 chimeras (0.0%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGV_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGV_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:01 26Mb 52.3% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 76.1% Build index 00:02 82Mb 100.0% Build index 00:02 95Mb 2.5% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 0/39 chimeras found (0.0%) 00:02 96Mb 2.6% Writing 39 non-chimeras 00:02 96Mb 100.0% Writing 39 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGV_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGV_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5LLGV_join.fq, 0.0% matched 00:00 54Mb 100.0% Searching MSM5LLGV_join.fq, 71.3% matched 00:00 3.3Mb 0.0% Rows 00:01 188Mb 35.8% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching MSM5LLGV_nonchimeric.fa, 0.0% matched 00:01 727Mb 100.0% Searching MSM5LLGV_nonchimeric.fa, 100.0% matched Total reads: 229779 Total joined: 18385 Average join len: 15.56 Stdev join len: 3.69 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 64.7% passed 18385 FASTQ recs (18.4k) 11886 Converted (11.9k, 64.7%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGV_truncated.fa 00:00 42Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGV_truncated.fa 00:00 21Mb 11182 seqs, 5268 uniques, 4761 singletons (90.4%) 00:00 21Mb Min size 1, median 1, max 1528, avg 2.12 00:00 21Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGV_derep.fa 00:00 21Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGV_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGV_derep.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGV_derep.fa 00:00 7.2Mb Getting sizes 00:00 7.2Mb Sorting 507 sequences 00:00 7.2Mb 0.2% Writing output 00:00 7.2Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 39 OTUs, 0 chimeras (0.0%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGV_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGV_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:01 26Mb 48.1% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 69.6% Build index 00:02 82Mb 100.0% Build index 00:02 95Mb 2.5% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 0/39 chimeras found (0.0%) 00:02 96Mb 2.6% Writing 39 non-chimeras 00:02 96Mb 100.0% Writing 39 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGV_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGV_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5LLGV_join.fq, 0.0% matched 00:00 55Mb 100.0% Searching MSM5LLGV_join.fq, 71.3% matched 00:00 3.3Mb 0.0% Rows 00:01 137Mb 24.7% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching MSM5LLGV_nonchimeric.fa, 0.0% matched 00:01 727Mb 100.0% Searching MSM5LLGV_nonchimeric.fa, 100.0% matched Total reads: 229779 Total joined: 18385 Average join len: 15.56 Stdev join len: 3.69 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 64.7% passed 18385 FASTQ recs (18.4k) 11886 Converted (11.9k, 64.7%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGV_truncated.fa 00:00 42Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGV_truncated.fa 00:00 21Mb 11182 seqs, 5268 uniques, 4761 singletons (90.4%) 00:00 21Mb Min size 1, median 1, max 1528, avg 2.12 00:00 21Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGV_derep.fa 00:00 21Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGV_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGV_derep.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGV_derep.fa 00:00 7.2Mb Getting sizes 00:00 7.2Mb Sorting 507 sequences 00:00 7.2Mb 0.2% Writing output 00:00 7.2Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 39 OTUs, 0 chimeras (0.0%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGV_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGV_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:01 25Mb 54.2% Masking 00:01 25Mb 100.0% Masking 00:01 26Mb 0.1% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 34.0% Build index 00:02 82Mb 100.0% Build index 00:02 95Mb 2.5% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 0/39 chimeras found (0.0%) 00:02 96Mb 2.6% Writing 39 non-chimeras 00:02 96Mb 100.0% Writing 39 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGV_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGV_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5LLGV_join.fq, 0.0% matched 00:01 54Mb 56.2% Searching MSM5LLGV_join.fq, 77.4% matched 00:01 55Mb 100.0% Searching MSM5LLGV_join.fq, 71.3% matched 00:00 3.3Mb 0.0% Rows 00:00 532Mb 100.0% Rows 00:00 532Mb Reading pointers...done. 00:00 534Mb Reading seqs...done. 00:00 709Mb 0.1% Searching MSM5LLGV_nonchimeric.fa, 0.0% matched 00:00 727Mb 100.0% Searching MSM5LLGV_nonchimeric.fa, 100.0% matched Total reads: 229779 Total joined: 18385 Average join len: 15.56 Stdev join len: 3.69 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 64.7% passed 18385 FASTQ recs (18.4k) 11886 Converted (11.9k, 64.7%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGV_truncated.fa 00:00 42Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGV_truncated.fa 00:00 21Mb 11182 seqs, 5268 uniques, 4761 singletons (90.4%) 00:00 21Mb Min size 1, median 1, max 1528, avg 2.12 00:00 21Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGV_derep.fa 00:00 21Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGV_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGV_derep.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGV_derep.fa 00:00 7.2Mb Getting sizes 00:00 7.2Mb Sorting 507 sequences 00:00 7.2Mb 0.2% Writing output 00:00 7.2Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 39 OTUs, 0 chimeras (0.0%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGV_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGV_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:01 26Mb 20.1% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 45.4% Build index 00:02 82Mb 100.0% Build index 00:02 93Mb 2.5% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 0/39 chimeras found (0.0%) 00:02 96Mb 2.6% Writing 39 non-chimeras 00:02 96Mb 100.0% Writing 39 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGV_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGV_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5LLGV_join.fq, 0.0% matched 00:01 54Mb 56.8% Searching MSM5LLGV_join.fq, 77.3% matched 00:01 54Mb 100.0% Searching MSM5LLGV_join.fq, 71.3% matched 00:00 3.3Mb 0.0% Rows 00:01 445Mb 79.2% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching MSM5LLGV_nonchimeric.fa, 0.0% matched 00:01 727Mb 100.0% Searching MSM5LLGV_nonchimeric.fa, 100.0% matched