Total reads: 228227 Total joined: 12449 Average join len: 15.49 Stdev join len: 3.77 00:00 47Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 67.0% passed 12449 FASTQ recs (12.4k) 8345 Converted (8345, 67.0%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGX_truncated.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGX_truncated.fa 00:01 20Mb 7913 seqs, 3499 uniques, 3130 singletons (89.5%) 00:01 20Mb Min size 1, median 1, max 1339, avg 2.26 00:01 20Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGX_derep.fa 00:01 20Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGX_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGX_derep.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGX_derep.fa 00:00 6.8Mb Getting sizes 00:00 6.8Mb Sorting 369 sequences 00:00 6.8Mb 0.3% Writing output 00:00 6.8Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 41 OTUs, 4 chimeras (1.1%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGX_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGX_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:01 26Mb 78.8% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:01 82Mb 100.0% Build index 00:01 93Mb 2.4% Search 0/1 chimeras found (0.0%) 00:02 96Mb 50.0% Search 0/21 chimeras found (0.0%) 00:02 96Mb 100.0% Search 1/41 chimeras found (2.4%) 00:02 96Mb 2.4% Writing 40 non-chimeras 00:02 96Mb 100.0% Writing 40 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGX_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGX_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5LLGX_join.fq, 0.0% matched 00:00 55Mb 100.0% Searching MSM5LLGX_join.fq, 77.5% matched 00:00 3.3Mb 0.0% Rows 00:01 352Mb 63.9% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching MSM5LLGX_nonchimeric.fa, 0.0% matched 00:01 727Mb 100.0% Searching MSM5LLGX_nonchimeric.fa, 90.0% matched Total reads: 228227 Total joined: 12449 Average join len: 15.49 Stdev join len: 3.77 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 67.0% passed 12449 FASTQ recs (12.4k) 8345 Converted (8345, 67.0%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGX_truncated.fa 00:01 41Mb 77.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGX_truncated.fa 00:01 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGX_truncated.fa 00:01 20Mb 7913 seqs, 3499 uniques, 3130 singletons (89.5%) 00:01 20Mb Min size 1, median 1, max 1339, avg 2.26 00:01 20Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGX_derep.fa 00:01 20Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGX_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGX_derep.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGX_derep.fa 00:00 6.8Mb Getting sizes 00:00 6.8Mb Sorting 369 sequences 00:00 6.8Mb 0.3% Writing output 00:00 6.8Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 41 OTUs, 4 chimeras (1.1%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGX_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGX_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:01 26Mb 77.0% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 88.5% Build index 00:02 82Mb 100.0% Build index 00:02 94Mb 2.4% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 1/41 chimeras found (2.4%) 00:02 96Mb 2.4% Writing 40 non-chimeras 00:02 96Mb 100.0% Writing 40 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGX_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGX_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5LLGX_join.fq, 0.0% matched 00:00 55Mb 100.0% Searching MSM5LLGX_join.fq, 77.5% matched 00:00 3.3Mb 0.0% Rows 00:00 532Mb 100.0% Rows 00:00 532Mb Reading pointers...done. 00:00 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching MSM5LLGX_nonchimeric.fa, 0.0% matched 00:01 727Mb 100.0% Searching MSM5LLGX_nonchimeric.fa, 90.0% matched Total reads: 228227 Total joined: 12449 Average join len: 15.49 Stdev join len: 3.77 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 67.0% passed 12449 FASTQ recs (12.4k) 8345 Converted (8345, 67.0%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGX_truncated.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGX_truncated.fa 00:00 20Mb 7913 seqs, 3499 uniques, 3130 singletons (89.5%) 00:00 20Mb Min size 1, median 1, max 1339, avg 2.26 00:00 20Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGX_derep.fa 00:00 20Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGX_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGX_derep.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGX_derep.fa 00:00 6.8Mb Getting sizes 00:00 6.8Mb Sorting 369 sequences 00:00 6.8Mb 0.3% Writing output 00:00 6.8Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 41 OTUs, 4 chimeras (1.1%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGX_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGX_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:01 25Mb 15.9% Masking 00:01 25Mb 100.0% Masking 00:01 26Mb 0.1% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 26.0% Build index 00:02 82Mb 100.0% Build index 00:02 94Mb 2.4% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 1/41 chimeras found (2.4%) 00:02 96Mb 2.4% Writing 40 non-chimeras 00:02 96Mb 100.0% Writing 40 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGX_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGX_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5LLGX_join.fq, 0.0% matched 00:01 54Mb 81.9% Searching MSM5LLGX_join.fq, 76.1% matched 00:01 54Mb 100.0% Searching MSM5LLGX_join.fq, 77.5% matched 00:00 3.3Mb 0.0% Rows 00:00 532Mb 100.0% Rows 00:00 532Mb Reading pointers...done. 00:00 534Mb Reading seqs...done. 00:00 709Mb 0.1% Searching MSM5LLGX_nonchimeric.fa, 0.0% matched 00:00 727Mb 100.0% Searching MSM5LLGX_nonchimeric.fa, 90.0% matched Total reads: 228227 Total joined: 12449 Average join len: 15.49 Stdev join len: 3.77 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 67.0% passed 12449 FASTQ recs (12.4k) 8345 Converted (8345, 67.0%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGX_truncated.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGX_truncated.fa 00:00 20Mb 7913 seqs, 3499 uniques, 3130 singletons (89.5%) 00:00 20Mb Min size 1, median 1, max 1339, avg 2.26 00:00 20Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGX_derep.fa 00:00 20Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGX_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGX_derep.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGX_derep.fa 00:00 6.8Mb Getting sizes 00:00 6.8Mb Sorting 369 sequences 00:00 6.8Mb 0.3% Writing output 00:00 6.8Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 41 OTUs, 4 chimeras (1.1%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGX_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGX_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:01 25Mb 49.7% Masking 00:01 25Mb 100.0% Masking 00:01 26Mb 0.1% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 22.9% Build index 00:02 82Mb 100.0% Build index 00:02 93Mb 2.4% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 1/41 chimeras found (2.4%) 00:02 96Mb 2.4% Writing 40 non-chimeras 00:02 96Mb 100.0% Writing 40 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGX_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLGX_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5LLGX_join.fq, 0.0% matched 00:01 54Mb 16.3% Searching MSM5LLGX_join.fq, 72.0% matched 00:01 54Mb 100.0% Searching MSM5LLGX_join.fq, 77.5% matched 00:00 3.3Mb 0.0% Rows 00:01 422Mb 74.5% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching MSM5LLGX_nonchimeric.fa, 0.0% matched 00:01 727Mb 100.0% Searching MSM5LLGX_nonchimeric.fa, 90.0% matched