Total reads: 187456 Total joined: 5982 Average join len: 14.98 Stdev join len: 4.23 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 68.1% passed 5982 FASTQ recs (5982) 4072 Converted (4072, 68.1%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHI_truncated.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHI_truncated.fa 00:00 19Mb 3860 seqs, 1948 uniques, 1732 singletons (88.9%) 00:00 19Mb Min size 1, median 1, max 425, avg 1.98 00:00 19Mb 0.1% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHI_derep.fa 00:00 19Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHI_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHI_derep.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHI_derep.fa 00:00 6.3Mb Getting sizes 00:00 6.3Mb Sorting 216 sequences 00:00 6.3Mb 0.5% Writing output 00:00 6.3Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 40 OTUs, 5 chimeras (2.3%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHI_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHI_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:01 26Mb 5.6% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 57.5% Build index 00:02 82Mb 100.0% Build index 00:02 94Mb 2.4% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 2/40 chimeras found (5.0%) 00:02 96Mb 2.5% Writing 38 non-chimeras 00:02 96Mb 100.0% Writing 38 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHI_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHI_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5LLHI_join.fq, 0.0% matched 00:00 55Mb 100.0% Searching MSM5LLHI_join.fq, 75.0% matched 00:00 3.3Mb 0.0% Rows 00:01 391Mb 69.0% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching MSM5LLHI_nonchimeric.fa, 0.0% matched 00:01 727Mb 100.0% Searching MSM5LLHI_nonchimeric.fa, 100.0% matched Total reads: 187456 Total joined: 5982 Average join len: 14.98 Stdev join len: 4.23 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 68.1% passed 5982 FASTQ recs (5982) 4072 Converted (4072, 68.1%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHI_truncated.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHI_truncated.fa 00:00 19Mb 3860 seqs, 1948 uniques, 1732 singletons (88.9%) 00:00 19Mb Min size 1, median 1, max 425, avg 1.98 00:00 19Mb 0.1% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHI_derep.fa 00:00 19Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHI_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHI_derep.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHI_derep.fa 00:00 6.3Mb Getting sizes 00:00 6.3Mb Sorting 216 sequences 00:00 6.3Mb 0.5% Writing output 00:00 6.3Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 40 OTUs, 5 chimeras (2.3%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHI_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHI_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:01 54Mb 71.7% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:01 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:01 25Mb 0.1% Masking 00:01 25Mb 100.0% Masking 00:01 26Mb 0.1% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 22.3% Build index 00:02 82Mb 100.0% Build index 00:02 94Mb 2.4% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 2/40 chimeras found (5.0%) 00:02 96Mb 2.5% Writing 38 non-chimeras 00:02 96Mb 100.0% Writing 38 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHI_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHI_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5LLHI_join.fq, 0.0% matched 00:00 55Mb 100.0% Searching MSM5LLHI_join.fq, 75.0% matched 00:00 3.3Mb 0.0% Rows 00:01 138Mb 25.0% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching MSM5LLHI_nonchimeric.fa, 0.0% matched 00:01 727Mb 100.0% Searching MSM5LLHI_nonchimeric.fa, 100.0% matched Total reads: 187456 Total joined: 5982 Average join len: 14.98 Stdev join len: 4.23 00:00 47Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 68.1% passed 5982 FASTQ recs (5982) 4072 Converted (4072, 68.1%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHI_truncated.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHI_truncated.fa 00:00 19Mb 3860 seqs, 1948 uniques, 1732 singletons (88.9%) 00:00 19Mb Min size 1, median 1, max 425, avg 1.98 00:00 19Mb 0.1% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHI_derep.fa 00:00 19Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHI_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHI_derep.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHI_derep.fa 00:00 6.3Mb Getting sizes 00:00 6.3Mb Sorting 216 sequences 00:00 6.3Mb 0.5% Writing output 00:00 6.3Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 40 OTUs, 5 chimeras (2.3%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHI_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHI_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:01 26Mb 44.3% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 62.2% Build index 00:02 82Mb 100.0% Build index 00:02 94Mb 2.4% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 2/40 chimeras found (5.0%) 00:02 96Mb 2.5% Writing 38 non-chimeras 00:02 96Mb 100.0% Writing 38 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHI_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHI_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5LLHI_join.fq, 0.0% matched 00:00 55Mb 100.0% Searching MSM5LLHI_join.fq, 75.0% matched 00:00 3.3Mb 0.0% Rows 00:00 532Mb 100.0% Rows 00:00 532Mb Reading pointers...done. 00:00 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching MSM5LLHI_nonchimeric.fa, 0.0% matched 00:01 727Mb 100.0% Searching MSM5LLHI_nonchimeric.fa, 100.0% matched Total reads: 187456 Total joined: 5982 Average join len: 14.98 Stdev join len: 4.23 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 68.1% passed 5982 FASTQ recs (5982) 4072 Converted (4072, 68.1%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHI_truncated.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHI_truncated.fa 00:00 19Mb 3860 seqs, 1948 uniques, 1732 singletons (88.9%) 00:00 19Mb Min size 1, median 1, max 425, avg 1.98 00:00 19Mb 0.1% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHI_derep.fa 00:00 19Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHI_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHI_derep.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHI_derep.fa 00:00 6.3Mb Getting sizes 00:00 6.3Mb Sorting 216 sequences 00:00 6.3Mb 0.5% Writing output 00:00 6.3Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 40 OTUs, 5 chimeras (2.3%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHI_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHI_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:01 26Mb 30.9% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 38.0% Build index 00:02 82Mb 100.0% Build index 00:02 95Mb 2.4% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 2/40 chimeras found (5.0%) 00:02 96Mb 2.5% Writing 38 non-chimeras 00:02 96Mb 100.0% Writing 38 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHI_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHI_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5LLHI_join.fq, 0.0% matched 00:01 54Mb 4.0% Searching MSM5LLHI_join.fq, 86.0% matched 00:01 55Mb 100.0% Searching MSM5LLHI_join.fq, 75.0% matched 00:00 3.3Mb 0.0% Rows 00:01 477Mb 88.0% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching MSM5LLHI_nonchimeric.fa, 0.0% matched 00:01 727Mb 100.0% Searching MSM5LLHI_nonchimeric.fa, 100.0% matched