Total reads: 302931 Total joined: 34388 Average join len: 14.43 Stdev join len: 4.65 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 67.0% passed 34388 FASTQ recs (34.4k) 23030 Converted (23.0k, 67.0%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHK_truncated.fa 00:01 44Mb 85.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHK_truncated.fa 00:01 44Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHK_truncated.fa 00:01 23Mb 21731 seqs, 11083 uniques, 10003 singletons (90.3%) 00:01 23Mb Min size 1, median 1, max 815, avg 1.96 00:01 23Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHK_derep.fa 00:01 23Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHK_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHK_derep.fa 00:00 42Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHK_derep.fa 00:00 8.4Mb Getting sizes 00:00 8.4Mb Sorting 1080 sequences 00:00 8.4Mb 0.1% Writing output 00:00 8.4Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 89 OTUs, 22 chimeras (2.0%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHK_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHK_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:01 26Mb 16.7% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 65.6% Build index 00:02 82Mb 100.0% Build index 00:02 94Mb 1.1% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 1/89 chimeras found (1.1%) 00:02 96Mb 1.1% Writing 88 non-chimeras 00:02 96Mb 100.0% Writing 88 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHK_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHK_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5LLHK_join.fq, 0.0% matched 00:01 54Mb 61.3% Searching MSM5LLHK_join.fq, 76.3% matched 00:01 55Mb 100.0% Searching MSM5LLHK_join.fq, 71.5% matched 00:00 3.3Mb 0.0% Rows 00:01 481Mb 88.5% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching MSM5LLHK_nonchimeric.fa, 0.0% matched 00:01 727Mb 100.0% Searching MSM5LLHK_nonchimeric.fa, 94.3% matched Total reads: 302931 Total joined: 34388 Average join len: 14.43 Stdev join len: 4.65 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 67.0% passed 34388 FASTQ recs (34.4k) 23030 Converted (23.0k, 67.0%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHK_truncated.fa 00:00 44Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHK_truncated.fa 00:00 23Mb 21731 seqs, 11083 uniques, 10003 singletons (90.3%) 00:00 23Mb Min size 1, median 1, max 815, avg 1.96 00:00 23Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHK_derep.fa 00:00 23Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHK_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHK_derep.fa 00:00 42Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHK_derep.fa 00:00 8.4Mb Getting sizes 00:00 8.4Mb Sorting 1080 sequences 00:00 8.4Mb 0.1% Writing output 00:00 8.4Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 89 OTUs, 22 chimeras (2.0%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHK_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHK_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:01 26Mb 20.5% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 67.8% Build index 00:02 82Mb 100.0% Build index 00:02 94Mb 1.1% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 1/89 chimeras found (1.1%) 00:02 96Mb 1.1% Writing 88 non-chimeras 00:02 96Mb 100.0% Writing 88 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHK_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHK_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5LLHK_join.fq, 0.0% matched 00:01 54Mb 67.7% Searching MSM5LLHK_join.fq, 73.6% matched 00:01 54Mb 100.0% Searching MSM5LLHK_join.fq, 71.5% matched 00:00 3.3Mb 0.0% Rows 00:00 532Mb 100.0% Rows 00:00 532Mb Reading pointers...done. 00:00 534Mb Reading seqs...done. 00:00 709Mb 0.1% Searching MSM5LLHK_nonchimeric.fa, 0.0% matched 00:01 727Mb 63.8% Searching MSM5LLHK_nonchimeric.fa, 98.1% matched 00:01 727Mb 100.0% Searching MSM5LLHK_nonchimeric.fa, 94.3% matched Total reads: 302931 Total joined: 34388 Average join len: 14.43 Stdev join len: 4.65 00:00 47Mb 0.1% Filtering 00:01 48Mb 37.1% Filtering, 100.0% passed 00:01 15Mb 100.0% Filtering, 67.0% passed 34388 FASTQ recs (34.4k) 23030 Converted (23.0k, 67.0%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHK_truncated.fa 00:00 44Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHK_truncated.fa 00:00 23Mb 21731 seqs, 11083 uniques, 10003 singletons (90.3%) 00:00 23Mb Min size 1, median 1, max 815, avg 1.96 00:00 23Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHK_derep.fa 00:00 23Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHK_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHK_derep.fa 00:00 42Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHK_derep.fa 00:00 8.4Mb Getting sizes 00:00 8.4Mb Sorting 1080 sequences 00:00 8.4Mb 0.1% Writing output 00:00 8.4Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 89 OTUs, 22 chimeras (2.0%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHK_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHK_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:01 51Mb 51.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:01 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:01 25Mb 0.1% Masking 00:01 25Mb 100.0% Masking 00:01 26Mb 0.1% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 16.0% Build index 00:02 82Mb 100.0% Build index 00:02 93Mb 1.1% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 1/89 chimeras found (1.1%) 00:02 96Mb 1.1% Writing 88 non-chimeras 00:02 96Mb 100.0% Writing 88 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHK_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHK_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5LLHK_join.fq, 0.0% matched 00:01 54Mb 3.8% Searching MSM5LLHK_join.fq, 86.9% matched 00:02 55Mb 74.3% Searching MSM5LLHK_join.fq, 74.0% matched 00:02 55Mb 100.0% Searching MSM5LLHK_join.fq, 71.4% matched 00:00 3.3Mb 0.0% Rows 00:01 429Mb 75.9% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching MSM5LLHK_nonchimeric.fa, 0.0% matched 00:01 727Mb 100.0% Searching MSM5LLHK_nonchimeric.fa, 94.3% matched Total reads: 302931 Total joined: 34388 Average join len: 14.43 Stdev join len: 4.65 00:00 47Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 67.0% passed 34388 FASTQ recs (34.4k) 23030 Converted (23.0k, 67.0%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHK_truncated.fa 00:00 44Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHK_truncated.fa 00:00 23Mb 21731 seqs, 11083 uniques, 10003 singletons (90.3%) 00:00 23Mb Min size 1, median 1, max 815, avg 1.96 00:00 23Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHK_derep.fa 00:01 23Mb 5.2% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHK_derep.fa 00:01 23Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHK_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHK_derep.fa 00:00 42Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHK_derep.fa 00:00 8.4Mb Getting sizes 00:00 8.4Mb Sorting 1080 sequences 00:00 8.4Mb 0.1% Writing output 00:00 8.4Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 89 OTUs, 22 chimeras (2.0%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHK_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHK_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:01 26Mb 8.0% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 43.0% Build index 00:02 82Mb 100.0% Build index 00:02 93Mb 1.1% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 1/89 chimeras found (1.1%) 00:02 96Mb 1.1% Writing 88 non-chimeras 00:02 96Mb 100.0% Writing 88 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHK_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLHK_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5LLHK_join.fq, 0.0% matched 00:01 54Mb 6.0% Searching MSM5LLHK_join.fq, 84.9% matched 00:02 55Mb 74.4% Searching MSM5LLHK_join.fq, 74.1% matched 00:02 55Mb 100.0% Searching MSM5LLHK_join.fq, 71.5% matched 00:00 3.3Mb 0.0% Rows 00:01 384Mb 68.2% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching MSM5LLHK_nonchimeric.fa, 0.0% matched 00:02 727Mb 67.2% Searching MSM5LLHK_nonchimeric.fa, 98.2% matched 00:02 727Mb 100.0% Searching MSM5LLHK_nonchimeric.fa, 94.3% matched