Total reads: 235006 Total joined: 20318 Average join len: 11.92 Stdev join len: 5.47 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 69.6% passed 20318 FASTQ recs (20.3k) 14138 Converted (14.1k, 69.6%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIC_truncated.fa 00:00 42Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIC_truncated.fa 00:00 21Mb 13419 seqs, 9529 uniques, 8975 singletons (94.2%) 00:00 21Mb Min size 1, median 1, max 548, avg 1.41 00:00 21Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIC_derep.fa 00:00 21Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIC_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIC_derep.fa 00:01 36Mb 0.2% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIC_derep.fa 00:01 42Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIC_derep.fa 00:01 8.0Mb Getting sizes 00:01 8.0Mb Sorting 554 sequences 00:01 8.0Mb 0.2% Writing output 00:01 8.0Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 71 OTUs, 19 chimeras (3.4%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIC_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIC_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:01 26Mb 78.7% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 97.4% Build index 00:02 82Mb 100.0% Build index 00:02 95Mb 1.4% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 1/71 chimeras found (1.4%) 00:02 96Mb 1.4% Writing 70 non-chimeras 00:02 96Mb 100.0% Writing 70 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIC_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIC_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5LLIC_join.fq, 0.0% matched 00:00 55Mb 100.0% Searching MSM5LLIC_join.fq, 52.7% matched 00:00 3.3Mb 0.0% Rows 00:01 63Mb 10.5% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching MSM5LLIC_nonchimeric.fa, 0.0% matched 00:01 728Mb 100.0% Searching MSM5LLIC_nonchimeric.fa, 95.7% matched Total reads: 235006 Total joined: 20318 Average join len: 11.92 Stdev join len: 5.47 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 69.6% passed 20318 FASTQ recs (20.3k) 14138 Converted (14.1k, 69.6%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIC_truncated.fa 00:00 42Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIC_truncated.fa 00:00 21Mb 13419 seqs, 9529 uniques, 8975 singletons (94.2%) 00:00 21Mb Min size 1, median 1, max 548, avg 1.41 00:00 21Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIC_derep.fa 00:01 21Mb 52.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIC_derep.fa 00:01 21Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIC_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIC_derep.fa 00:00 42Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIC_derep.fa 00:00 8.0Mb Getting sizes 00:00 8.0Mb Sorting 554 sequences 00:00 8.0Mb 0.2% Writing output 00:00 8.0Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 72 OTUs, 18 chimeras (3.2%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIC_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIC_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:01 26Mb 70.1% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:01 82Mb 100.0% Build index 00:01 94Mb 1.4% Search 0/1 chimeras found (0.0%) 00:02 96Mb 69.9% Search 0/51 chimeras found (0.0%) 00:02 96Mb 100.0% Search 1/72 chimeras found (1.4%) 00:02 96Mb 1.4% Writing 71 non-chimeras 00:02 96Mb 100.0% Writing 71 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIC_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIC_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5LLIC_join.fq, 0.0% matched 00:00 54Mb 100.0% Searching MSM5LLIC_join.fq, 52.7% matched 00:00 3.3Mb 0.0% Rows 00:01 173Mb 33.0% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching MSM5LLIC_nonchimeric.fa, 0.0% matched 00:01 728Mb 100.0% Searching MSM5LLIC_nonchimeric.fa, 95.8% matched Total reads: 235006 Total joined: 20318 Average join len: 11.92 Stdev join len: 5.47 00:00 47Mb 0.1% Filtering 00:01 48Mb 0.2% Filtering, 0.0% passed 00:01 15Mb 100.0% Filtering, 69.6% passed 20318 FASTQ recs (20.3k) 14138 Converted (14.1k, 69.6%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIC_truncated.fa 00:00 42Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIC_truncated.fa 00:00 21Mb 13419 seqs, 9529 uniques, 8975 singletons (94.2%) 00:00 21Mb Min size 1, median 1, max 548, avg 1.41 00:00 21Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIC_derep.fa 00:00 21Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIC_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIC_derep.fa 00:00 42Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIC_derep.fa 00:00 8.0Mb Getting sizes 00:00 8.0Mb Sorting 554 sequences 00:00 8.0Mb 0.2% Writing output 00:00 8.0Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 71 OTUs, 19 chimeras (3.4%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIC_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIC_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:01 25Mb 69.2% Masking 00:01 25Mb 100.0% Masking 00:01 26Mb 0.1% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 44.5% Build index 00:02 82Mb 100.0% Build index 00:02 93Mb 1.4% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 1/71 chimeras found (1.4%) 00:02 96Mb 1.4% Writing 70 non-chimeras 00:02 96Mb 100.0% Writing 70 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIC_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIC_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5LLIC_join.fq, 0.0% matched 00:01 55Mb 23.1% Searching MSM5LLIC_join.fq, 45.3% matched 00:01 55Mb 100.0% Searching MSM5LLIC_join.fq, 52.7% matched 00:00 3.3Mb 0.0% Rows 00:01 121Mb 21.1% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching MSM5LLIC_nonchimeric.fa, 0.0% matched 00:01 728Mb 100.0% Searching MSM5LLIC_nonchimeric.fa, 95.7% matched Total reads: 235006 Total joined: 20318 Average join len: 11.92 Stdev join len: 5.47 00:00 48Mb 0.1% Filtering 00:01 15Mb 100.0% Filtering, 69.6% passed 20318 FASTQ recs (20.3k) 14138 Converted (14.1k, 69.6%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIC_truncated.fa 00:00 42Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIC_truncated.fa 00:00 21Mb 13419 seqs, 9529 uniques, 8975 singletons (94.2%) 00:00 21Mb Min size 1, median 1, max 548, avg 1.41 00:00 21Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIC_derep.fa 00:00 21Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIC_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIC_derep.fa 00:00 42Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIC_derep.fa 00:00 8.0Mb Getting sizes 00:00 8.0Mb Sorting 554 sequences 00:00 8.0Mb 0.2% Writing output 00:00 8.0Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 71 OTUs, 19 chimeras (3.4%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIC_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIC_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:01 25Mb 67.2% Masking 00:01 25Mb 100.0% Masking 00:01 26Mb 0.1% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 8.9% Build index 00:02 82Mb 100.0% Build index 00:02 95Mb 1.4% Search 0/1 chimeras found (0.0%) 00:03 96Mb 54.2% Search 0/39 chimeras found (0.0%) 00:03 96Mb 100.0% Search 1/71 chimeras found (1.4%) 00:03 96Mb 1.4% Writing 70 non-chimeras 00:03 96Mb 100.0% Writing 70 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIC_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIC_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5LLIC_join.fq, 0.0% matched 00:00 54Mb 100.0% Searching MSM5LLIC_join.fq, 52.7% matched 00:00 3.3Mb 0.0% Rows 00:01 33Mb 4.6% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching MSM5LLIC_nonchimeric.fa, 0.0% matched 00:02 727Mb 7.4% Searching MSM5LLIC_nonchimeric.fa, 100.0% matched 00:02 728Mb 100.0% Searching MSM5LLIC_nonchimeric.fa, 95.7% matched