Total reads: 237982 Total joined: 12456 Average join len: 12.80 Stdev join len: 5.33 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 70.0% passed 12456 FASTQ recs (12.5k) 8720 Converted (8720, 70.0%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIE_truncated.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIE_truncated.fa 00:00 20Mb 8271 seqs, 4298 uniques, 3921 singletons (91.2%) 00:00 20Mb Min size 1, median 1, max 897, avg 1.92 00:00 20Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIE_derep.fa 00:00 20Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIE_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIE_derep.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIE_derep.fa 00:00 6.9Mb Getting sizes 00:00 6.9Mb Sorting 377 sequences 00:00 6.9Mb 0.3% Writing output 00:00 6.9Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 47 OTUs, 5 chimeras (1.3%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIE_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIE_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:01 25Mb 37.3% Masking 00:01 25Mb 100.0% Masking 00:01 26Mb 0.1% Word stats 00:02 26Mb 61.9% Word stats 00:02 26Mb 100.0% Word stats 00:02 26Mb 100.0% Alloc rows 00:02 82Mb 0.1% Build index 00:03 82Mb 20.6% Build index 00:04 82Mb 51.7% Build index 00:05 82Mb 79.5% Build index 00:05 82Mb 100.0% Build index 00:05 95Mb 2.1% Search 0/1 chimeras found (0.0%) 00:05 97Mb 100.0% Search 0/47 chimeras found (0.0%) 00:05 97Mb 2.1% Writing 47 non-chimeras 00:05 97Mb 100.0% Writing 47 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIE_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIE_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5LLIE_join.fq, 0.0% matched 00:01 52Mb 0.2% Searching MSM5LLIE_join.fq, 0.0% matched 00:01 54Mb 100.0% Searching MSM5LLIE_join.fq, 69.8% matched 00:00 3.3Mb 0.0% Rows 00:01 61Mb 10.3% Rows 00:02 501Mb 91.7% Rows 00:02 532Mb 100.0% Rows 00:02 532Mb Reading pointers...done. 00:02 534Mb Reading seqs...done. 00:03 709Mb 0.1% Searching MSM5LLIE_nonchimeric.fa, 0.0% matched 00:03 727Mb 100.0% Searching MSM5LLIE_nonchimeric.fa, 100.0% matched Total reads: 237982 Total joined: 12456 Average join len: 12.80 Stdev join len: 5.33 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 70.0% passed 12456 FASTQ recs (12.5k) 8720 Converted (8720, 70.0%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIE_truncated.fa 00:01 40Mb 6.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIE_truncated.fa 00:01 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIE_truncated.fa 00:01 20Mb 8271 seqs, 4298 uniques, 3921 singletons (91.2%) 00:01 20Mb Min size 1, median 1, max 897, avg 1.92 00:01 20Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIE_derep.fa 00:01 20Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIE_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIE_derep.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIE_derep.fa 00:00 6.9Mb Getting sizes 00:00 6.9Mb Sorting 377 sequences 00:00 6.9Mb 0.3% Writing output 00:00 6.9Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 47 OTUs, 5 chimeras (1.3%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIE_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIE_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:01 26Mb 79.5% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 93.2% Build index 00:02 82Mb 100.0% Build index 00:02 94Mb 2.1% Search 0/1 chimeras found (0.0%) 00:02 97Mb 100.0% Search 0/47 chimeras found (0.0%) 00:02 97Mb 2.1% Writing 47 non-chimeras 00:02 97Mb 100.0% Writing 47 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIE_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIE_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5LLIE_join.fq, 0.0% matched 00:00 54Mb 100.0% Searching MSM5LLIE_join.fq, 69.8% matched 00:00 3.3Mb 0.0% Rows 00:01 516Mb 95.1% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching MSM5LLIE_nonchimeric.fa, 0.0% matched 00:01 727Mb 100.0% Searching MSM5LLIE_nonchimeric.fa, 100.0% matched Total reads: 237982 Total joined: 12456 Average join len: 12.80 Stdev join len: 5.33 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 70.0% passed 12456 FASTQ recs (12.5k) 8720 Converted (8720, 70.0%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIE_truncated.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIE_truncated.fa 00:00 20Mb 8271 seqs, 4298 uniques, 3921 singletons (91.2%) 00:00 20Mb Min size 1, median 1, max 897, avg 1.92 00:00 20Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIE_derep.fa 00:00 20Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIE_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIE_derep.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIE_derep.fa 00:00 6.9Mb Getting sizes 00:00 6.9Mb Sorting 377 sequences 00:00 6.9Mb 0.3% Writing output 00:00 6.9Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 47 OTUs, 5 chimeras (1.3%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIE_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIE_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:01 26Mb 76.8% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 99.6% Build index 00:02 82Mb 100.0% Build index 00:02 95Mb 2.1% Search 0/1 chimeras found (0.0%) 00:02 97Mb 100.0% Search 0/47 chimeras found (0.0%) 00:02 97Mb 2.1% Writing 47 non-chimeras 00:02 97Mb 100.0% Writing 47 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIE_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIE_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5LLIE_join.fq, 0.0% matched 00:00 54Mb 100.0% Searching MSM5LLIE_join.fq, 69.8% matched 00:00 3.3Mb 0.0% Rows 00:00 532Mb 100.0% Rows 00:00 532Mb Reading pointers...done. 00:00 534Mb Reading seqs...done. 00:00 709Mb 0.1% Searching MSM5LLIE_nonchimeric.fa, 0.0% matched 00:01 727Mb 21.6% Searching MSM5LLIE_nonchimeric.fa, 100.0% matched 00:01 727Mb 100.0% Searching MSM5LLIE_nonchimeric.fa, 100.0% matched Total reads: 237982 Total joined: 12456 Average join len: 12.80 Stdev join len: 5.33 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 70.0% passed 12456 FASTQ recs (12.5k) 8720 Converted (8720, 70.0%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIE_truncated.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIE_truncated.fa 00:00 20Mb 8271 seqs, 4298 uniques, 3921 singletons (91.2%) 00:00 20Mb Min size 1, median 1, max 897, avg 1.92 00:00 20Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIE_derep.fa 00:00 20Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIE_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIE_derep.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIE_derep.fa 00:00 6.9Mb Getting sizes 00:00 6.9Mb Sorting 377 sequences 00:00 6.9Mb 0.3% Writing output 00:00 6.9Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 46 OTUs, 6 chimeras (1.6%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIE_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIE_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:01 25Mb 48.5% Masking 00:01 25Mb 100.0% Masking 00:01 26Mb 0.1% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 24.1% Build index 00:02 82Mb 100.0% Build index 00:02 93Mb 2.1% Search 0/1 chimeras found (0.0%) 00:02 97Mb 100.0% Search 0/46 chimeras found (0.0%) 00:02 97Mb 2.2% Writing 46 non-chimeras 00:02 97Mb 100.0% Writing 46 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIE_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIE_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5LLIE_join.fq, 0.0% matched 00:01 54Mb 20.4% Searching MSM5LLIE_join.fq, 64.8% matched 00:01 55Mb 100.0% Searching MSM5LLIE_join.fq, 69.7% matched 00:00 3.3Mb 0.0% Rows 00:01 420Mb 74.3% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching MSM5LLIE_nonchimeric.fa, 0.0% matched 00:01 727Mb 100.0% Searching MSM5LLIE_nonchimeric.fa, 100.0% matched