Total reads: 277620 Total joined: 6789 Average join len: 14.89 Stdev join len: 4.31 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 64.5% passed 6789 FASTQ recs (6789) 4377 Converted (4377, 64.5%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIK_truncated.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIK_truncated.fa 00:00 19Mb 4146 seqs, 2373 uniques, 2147 singletons (90.5%) 00:00 19Mb Min size 1, median 1, max 395, avg 1.75 00:00 19Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIK_derep.fa 00:00 19Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIK_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIK_derep.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIK_derep.fa 00:00 6.5Mb Getting sizes 00:00 6.5Mb Sorting 226 sequences 00:00 6.5Mb 0.4% Writing output 00:00 6.5Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 34 OTUs, 1 chimeras (0.4%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIK_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIK_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:01 25Mb 3.7% Masking 00:01 25Mb 100.0% Masking 00:01 26Mb 0.1% Word stats 00:02 26Mb 43.9% Word stats 00:02 26Mb 100.0% Word stats 00:02 26Mb 100.0% Alloc rows 00:02 82Mb 0.1% Build index 00:03 82Mb 42.7% Build index 00:03 82Mb 100.0% Build index 00:03 93Mb 2.9% Search 0/1 chimeras found (0.0%) 00:03 96Mb 100.0% Search 1/34 chimeras found (2.9%) 00:03 96Mb 2.9% Writing 33 non-chimeras 00:03 96Mb 100.0% Writing 33 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIK_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIK_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5LLIK_join.fq, 0.0% matched 00:01 54Mb 56.8% Searching MSM5LLIK_join.fq, 71.7% matched 00:01 55Mb 100.0% Searching MSM5LLIK_join.fq, 65.5% matched 00:00 3.3Mb 0.0% Rows 00:01 497Mb 91.3% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching MSM5LLIK_nonchimeric.fa, 0.0% matched 00:01 727Mb 100.0% Searching MSM5LLIK_nonchimeric.fa, 100.0% matched Total reads: 277620 Total joined: 6789 Average join len: 14.89 Stdev join len: 4.31 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 64.5% passed 6789 FASTQ recs (6789) 4377 Converted (4377, 64.5%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIK_truncated.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIK_truncated.fa 00:00 19Mb 4146 seqs, 2373 uniques, 2147 singletons (90.5%) 00:00 19Mb Min size 1, median 1, max 395, avg 1.75 00:00 19Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIK_derep.fa 00:01 19Mb 39.9% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIK_derep.fa 00:01 19Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIK_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIK_derep.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIK_derep.fa 00:00 6.5Mb Getting sizes 00:00 6.5Mb Sorting 226 sequences 00:00 6.5Mb 0.4% Writing output 00:00 6.5Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 34 OTUs, 1 chimeras (0.4%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIK_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIK_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:01 26Mb 97.6% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:01 82Mb 100.0% Build index 00:01 94Mb 2.9% Search 0/1 chimeras found (0.0%) 00:01 96Mb 100.0% Search 1/34 chimeras found (2.9%) 00:01 96Mb 2.9% Writing 33 non-chimeras 00:01 96Mb 100.0% Writing 33 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIK_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIK_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5LLIK_join.fq, 0.0% matched 00:01 55Mb 83.2% Searching MSM5LLIK_join.fq, 64.8% matched 00:01 55Mb 100.0% Searching MSM5LLIK_join.fq, 65.6% matched 00:00 3.3Mb 0.0% Rows 00:00 532Mb 100.0% Rows 00:00 532Mb Reading pointers...done. 00:00 534Mb Reading seqs...done. 00:00 709Mb 0.1% Searching MSM5LLIK_nonchimeric.fa, 0.0% matched 00:00 727Mb 100.0% Searching MSM5LLIK_nonchimeric.fa, 100.0% matched Total reads: 277620 Total joined: 6789 Average join len: 14.89 Stdev join len: 4.31 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 64.5% passed 6789 FASTQ recs (6789) 4377 Converted (4377, 64.5%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIK_truncated.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIK_truncated.fa 00:00 19Mb 4146 seqs, 2373 uniques, 2147 singletons (90.5%) 00:00 19Mb Min size 1, median 1, max 395, avg 1.75 00:00 19Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIK_derep.fa 00:00 19Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIK_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIK_derep.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIK_derep.fa 00:00 6.5Mb Getting sizes 00:00 6.5Mb Sorting 226 sequences 00:00 6.5Mb 0.4% Writing output 00:00 6.5Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 34 OTUs, 1 chimeras (0.4%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIK_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIK_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:01 26Mb 64.3% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 80.8% Build index 00:02 82Mb 100.0% Build index 00:02 94Mb 2.9% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 1/34 chimeras found (2.9%) 00:02 96Mb 2.9% Writing 33 non-chimeras 00:02 96Mb 100.0% Writing 33 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIK_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIK_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5LLIK_join.fq, 0.0% matched 00:00 54Mb 100.0% Searching MSM5LLIK_join.fq, 65.6% matched 00:00 3.3Mb 0.0% Rows 00:00 532Mb 100.0% Rows 00:00 532Mb Reading pointers...done. 00:00 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching MSM5LLIK_nonchimeric.fa, 0.0% matched 00:01 727Mb 100.0% Searching MSM5LLIK_nonchimeric.fa, 100.0% matched Total reads: 277620 Total joined: 6789 Average join len: 14.89 Stdev join len: 4.31 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 64.5% passed 6789 FASTQ recs (6789) 4377 Converted (4377, 64.5%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIK_truncated.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIK_truncated.fa 00:00 19Mb 4146 seqs, 2373 uniques, 2147 singletons (90.5%) 00:00 19Mb Min size 1, median 1, max 395, avg 1.75 00:00 19Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIK_derep.fa 00:00 19Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIK_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIK_derep.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIK_derep.fa 00:00 6.5Mb Getting sizes 00:00 6.5Mb Sorting 226 sequences 00:00 6.5Mb 0.4% Writing output 00:00 6.5Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 34 OTUs, 1 chimeras (0.4%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIK_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIK_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:01 25Mb 84.1% Masking 00:01 25Mb 100.0% Masking 00:01 26Mb 0.1% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 32.4% Build index 00:02 82Mb 100.0% Build index 00:02 95Mb 2.9% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 1/34 chimeras found (2.9%) 00:02 96Mb 2.9% Writing 33 non-chimeras 00:02 96Mb 100.0% Writing 33 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIK_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIK_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5LLIK_join.fq, 0.0% matched 00:01 54Mb 51.5% Searching MSM5LLIK_join.fq, 72.7% matched 00:01 55Mb 100.0% Searching MSM5LLIK_join.fq, 65.5% matched 00:00 3.3Mb 0.0% Rows 00:01 530Mb 99.2% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching MSM5LLIK_nonchimeric.fa, 0.0% matched 00:01 727Mb 100.0% Searching MSM5LLIK_nonchimeric.fa, 100.0% matched