Total reads: 300576 Total joined: 20636 Average join len: 16.11 Stdev join len: 2.97 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 62.2% passed 20636 FASTQ recs (20.6k) 12839 Converted (12.8k, 62.2%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIO_truncated.fa 00:00 42Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIO_truncated.fa 00:00 21Mb 12095 seqs, 5002 uniques, 4397 singletons (87.9%) 00:00 21Mb Min size 1, median 1, max 1040, avg 2.42 00:00 21Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIO_derep.fa 00:00 21Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIO_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIO_derep.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIO_derep.fa 00:00 7.0Mb Getting sizes 00:00 7.0Mb Sorting 605 sequences 00:00 7.0Mb 0.2% Writing output 00:00 7.0Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 44 OTUs, 2 chimeras (0.3%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIO_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIO_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:01 43Mb 3.7% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:01 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:01 25Mb 0.1% Masking 00:01 25Mb 100.0% Masking 00:01 26Mb 0.1% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 5.5% Build index 00:02 82Mb 100.0% Build index 00:02 94Mb 2.2% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 0/44 chimeras found (0.0%) 00:02 96Mb 2.3% Writing 44 non-chimeras 00:02 96Mb 100.0% Writing 44 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIO_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIO_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5LLIO_join.fq, 0.0% matched 00:01 54Mb 5.8% Searching MSM5LLIO_join.fq, 89.2% matched 00:01 55Mb 100.0% Searching MSM5LLIO_join.fq, 78.2% matched 00:00 3.3Mb 0.0% Rows 00:01 488Mb 89.7% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching MSM5LLIO_nonchimeric.fa, 0.0% matched 00:01 728Mb 100.0% Searching MSM5LLIO_nonchimeric.fa, 95.5% matched Total reads: 300576 Total joined: 20636 Average join len: 16.11 Stdev join len: 2.97 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 62.2% passed 20636 FASTQ recs (20.6k) 12839 Converted (12.8k, 62.2%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIO_truncated.fa 00:01 42Mb 76.8% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIO_truncated.fa 00:01 42Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIO_truncated.fa 00:01 21Mb 12095 seqs, 5002 uniques, 4397 singletons (87.9%) 00:01 21Mb Min size 1, median 1, max 1040, avg 2.42 00:01 21Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIO_derep.fa 00:01 21Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIO_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIO_derep.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIO_derep.fa 00:00 7.0Mb Getting sizes 00:00 7.0Mb Sorting 605 sequences 00:00 7.0Mb 0.2% Writing output 00:00 7.0Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 44 OTUs, 2 chimeras (0.3%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIO_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIO_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:01 26Mb 74.4% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:01 82Mb 100.0% Build index 00:01 94Mb 2.2% Search 0/1 chimeras found (0.0%) 00:02 96Mb 51.1% Search 0/23 chimeras found (0.0%) 00:02 96Mb 100.0% Search 0/44 chimeras found (0.0%) 00:02 96Mb 2.3% Writing 44 non-chimeras 00:02 96Mb 100.0% Writing 44 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIO_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIO_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5LLIO_join.fq, 0.0% matched 00:00 55Mb 100.0% Searching MSM5LLIO_join.fq, 78.2% matched 00:00 3.3Mb 0.0% Rows 00:01 436Mb 77.3% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching MSM5LLIO_nonchimeric.fa, 0.0% matched 00:01 728Mb 100.0% Searching MSM5LLIO_nonchimeric.fa, 97.7% matched Total reads: 300576 Total joined: 20636 Average join len: 16.11 Stdev join len: 2.97 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 62.2% passed 20636 FASTQ recs (20.6k) 12839 Converted (12.8k, 62.2%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIO_truncated.fa 00:00 42Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIO_truncated.fa 00:00 21Mb 12095 seqs, 5002 uniques, 4397 singletons (87.9%) 00:00 21Mb Min size 1, median 1, max 1040, avg 2.42 00:00 21Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIO_derep.fa 00:00 21Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIO_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIO_derep.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIO_derep.fa 00:00 7.0Mb Getting sizes 00:00 7.0Mb Sorting 605 sequences 00:00 7.0Mb 0.2% Writing output 00:00 7.0Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 44 OTUs, 2 chimeras (0.3%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIO_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIO_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:01 25Mb 5.2% Masking 00:01 25Mb 100.0% Masking 00:01 26Mb 0.1% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 23.5% Build index 00:02 82Mb 100.0% Build index 00:02 94Mb 2.2% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 0/44 chimeras found (0.0%) 00:02 96Mb 2.3% Writing 44 non-chimeras 00:02 96Mb 100.0% Writing 44 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIO_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIO_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5LLIO_join.fq, 0.0% matched 00:01 54Mb 52.2% Searching MSM5LLIO_join.fq, 84.7% matched 00:01 55Mb 100.0% Searching MSM5LLIO_join.fq, 77.6% matched 00:00 3.3Mb 0.0% Rows 00:00 532Mb 100.0% Rows 00:00 532Mb Reading pointers...done. 00:00 534Mb Reading seqs...done. 00:00 709Mb 0.1% Searching MSM5LLIO_nonchimeric.fa, 0.0% matched 00:00 727Mb 100.0% Searching MSM5LLIO_nonchimeric.fa, 95.5% matched Total reads: 300576 Total joined: 20636 Average join len: 16.11 Stdev join len: 2.97 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 62.2% passed 20636 FASTQ recs (20.6k) 12839 Converted (12.8k, 62.2%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIO_truncated.fa 00:00 42Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIO_truncated.fa 00:00 21Mb 12095 seqs, 5002 uniques, 4397 singletons (87.9%) 00:00 21Mb Min size 1, median 1, max 1040, avg 2.42 00:00 21Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIO_derep.fa 00:00 21Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIO_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIO_derep.fa 00:00 41Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIO_derep.fa 00:00 7.0Mb Getting sizes 00:00 7.0Mb Sorting 605 sequences 00:00 7.0Mb 0.2% Writing output 00:00 7.0Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 44 OTUs, 2 chimeras (0.3%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIO_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIO_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:01 26Mb 39.5% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 62.0% Build index 00:02 82Mb 100.0% Build index 00:02 95Mb 2.2% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 0/44 chimeras found (0.0%) 00:02 96Mb 2.3% Writing 44 non-chimeras 00:02 96Mb 100.0% Writing 44 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIO_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIO_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5LLIO_join.fq, 0.0% matched 00:01 55Mb 90.7% Searching MSM5LLIO_join.fq, 77.8% matched 00:01 55Mb 100.0% Searching MSM5LLIO_join.fq, 78.2% matched 00:00 3.3Mb 0.0% Rows 00:00 532Mb 100.0% Rows 00:00 532Mb Reading pointers...done. 00:00 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching MSM5LLIO_nonchimeric.fa, 0.0% matched 00:01 728Mb 100.0% Searching MSM5LLIO_nonchimeric.fa, 95.5% matched