Total reads: 309325 Total joined: 29893 Average join len: 10.68 Stdev join len: 5.44 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 72.0% passed 29893 FASTQ recs (29.9k) 21512 Converted (21.5k, 72.0%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIQ_truncated.fa 00:00 44Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIQ_truncated.fa 00:00 23Mb 20436 seqs, 13175 uniques, 12349 singletons (93.7%) 00:00 23Mb Min size 1, median 1, max 979, avg 1.55 00:00 23Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIQ_derep.fa 00:00 23Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIQ_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIQ_derep.fa 00:00 42Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIQ_derep.fa 00:00 8.8Mb Getting sizes 00:00 8.8Mb Sorting 826 sequences 00:00 8.8Mb 0.1% Writing output 00:00 8.8Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 42 OTUs, 2 chimeras (0.2%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIQ_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIQ_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:00 26Mb 100.0% Word stats 00:00 26Mb 100.0% Alloc rows 00:00 82Mb 0.1% Build index 00:01 82Mb 3.9% Build index 00:01 82Mb 100.0% Build index 00:01 94Mb 2.3% Search 0/1 chimeras found (0.0%) 00:01 97Mb 100.0% Search 0/42 chimeras found (0.0%) 00:01 97Mb 2.4% Writing 42 non-chimeras 00:01 97Mb 100.0% Writing 42 non-chimeras 00:01 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIQ_nonchimeric.fa 00:01 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIQ_nonchimeric.fa 00:01 6.1Mb 0.1% Masking 00:01 6.1Mb 100.0% Masking 00:01 6.9Mb 0.1% Word stats 00:01 6.9Mb 100.0% Word stats 00:01 6.9Mb 100.0% Alloc rows 00:01 6.9Mb 0.1% Build index 00:01 6.9Mb 100.0% Build index 00:01 40Mb 0.1% Searching MSM5LLIQ_join.fq, 0.0% matched 00:02 54Mb 99.4% Searching MSM5LLIQ_join.fq, 60.1% matched 00:02 54Mb 100.0% Searching MSM5LLIQ_join.fq, 60.2% matched 00:00 3.3Mb 0.0% Rows 00:00 532Mb 100.0% Rows 00:00 532Mb Reading pointers...done. 00:00 534Mb Reading seqs...done. 00:00 709Mb 0.1% Searching MSM5LLIQ_nonchimeric.fa, 0.0% matched 00:00 727Mb 100.0% Searching MSM5LLIQ_nonchimeric.fa, 90.5% matched Total reads: 309325 Total joined: 29893 Average join len: 10.68 Stdev join len: 5.44 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 72.0% passed 29893 FASTQ recs (29.9k) 21512 Converted (21.5k, 72.0%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIQ_truncated.fa 00:00 44Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIQ_truncated.fa 00:00 23Mb 20436 seqs, 13175 uniques, 12349 singletons (93.7%) 00:00 23Mb Min size 1, median 1, max 979, avg 1.55 00:00 23Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIQ_derep.fa 00:00 23Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIQ_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIQ_derep.fa 00:00 42Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIQ_derep.fa 00:00 8.8Mb Getting sizes 00:00 8.8Mb Sorting 826 sequences 00:00 8.8Mb 0.1% Writing output 00:00 8.8Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 42 OTUs, 2 chimeras (0.2%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIQ_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIQ_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:01 46Mb 23.8% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:01 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:01 25Mb 0.1% Masking 00:01 25Mb 100.0% Masking 00:01 26Mb 0.1% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 13.4% Build index 00:02 82Mb 100.0% Build index 00:02 94Mb 2.3% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 0/42 chimeras found (0.0%) 00:02 96Mb 2.4% Writing 42 non-chimeras 00:02 96Mb 100.0% Writing 42 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIQ_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIQ_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5LLIQ_join.fq, 0.0% matched 00:01 54Mb 14.8% Searching MSM5LLIQ_join.fq, 60.2% matched 00:01 54Mb 100.0% Searching MSM5LLIQ_join.fq, 60.2% matched 00:00 3.3Mb 0.0% Rows 00:01 112Mb 18.6% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching MSM5LLIQ_nonchimeric.fa, 0.0% matched 00:01 727Mb 100.0% Searching MSM5LLIQ_nonchimeric.fa, 90.5% matched Total reads: 309325 Total joined: 29893 Average join len: 10.68 Stdev join len: 5.44 00:00 47Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 72.0% passed 29893 FASTQ recs (29.9k) 21512 Converted (21.5k, 72.0%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIQ_truncated.fa 00:00 44Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIQ_truncated.fa 00:00 23Mb 20436 seqs, 13175 uniques, 12349 singletons (93.7%) 00:00 23Mb Min size 1, median 1, max 979, avg 1.55 00:00 23Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIQ_derep.fa 00:00 23Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIQ_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIQ_derep.fa 00:00 42Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIQ_derep.fa 00:00 8.8Mb Getting sizes 00:00 8.8Mb Sorting 826 sequences 00:00 8.8Mb 0.1% Writing output 00:00 8.8Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:01 46Mb 62.8% 31 OTUs, 0 chimeras (0.0%) 00:01 46Mb 100.0% 42 OTUs, 2 chimeras (0.2%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIQ_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIQ_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:00 26Mb 100.0% Word stats 00:00 26Mb 100.0% Alloc rows 00:00 82Mb 0.1% Build index 00:01 82Mb 0.2% Build index 00:01 82Mb 100.0% Build index 00:01 93Mb 2.3% Search 0/1 chimeras found (0.0%) 00:02 96Mb 72.1% Search 0/31 chimeras found (0.0%) 00:02 96Mb 100.0% Search 0/42 chimeras found (0.0%) 00:02 96Mb 2.4% Writing 42 non-chimeras 00:02 96Mb 100.0% Writing 42 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIQ_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIQ_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5LLIQ_join.fq, 0.0% matched 00:01 54Mb 57.9% Searching MSM5LLIQ_join.fq, 65.3% matched 00:01 54Mb 100.0% Searching MSM5LLIQ_join.fq, 60.2% matched 00:00 3.3Mb 0.0% Rows 00:01 134Mb 24.0% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching MSM5LLIQ_nonchimeric.fa, 0.0% matched 00:01 727Mb 100.0% Searching MSM5LLIQ_nonchimeric.fa, 90.5% matched Total reads: 309325 Total joined: 29893 Average join len: 10.68 Stdev join len: 5.44 00:00 48Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 72.0% passed 29893 FASTQ recs (29.9k) 21512 Converted (21.5k, 72.0%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIQ_truncated.fa 00:00 44Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIQ_truncated.fa 00:00 23Mb 20436 seqs, 13175 uniques, 12349 singletons (93.7%) 00:00 23Mb Min size 1, median 1, max 979, avg 1.55 00:00 23Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIQ_derep.fa 00:00 23Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIQ_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIQ_derep.fa 00:00 42Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIQ_derep.fa 00:00 8.8Mb Getting sizes 00:00 8.8Mb Sorting 826 sequences 00:00 8.8Mb 0.1% Writing output 00:00 8.8Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 42 OTUs, 2 chimeras (0.2%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIQ_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIQ_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:01 26Mb 66.8% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 76.8% Build index 00:02 82Mb 100.0% Build index 00:02 95Mb 2.3% Search 0/1 chimeras found (0.0%) 00:02 97Mb 100.0% Search 0/42 chimeras found (0.0%) 00:02 97Mb 2.4% Writing 42 non-chimeras 00:02 97Mb 100.0% Writing 42 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIQ_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5LLIQ_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5LLIQ_join.fq, 0.0% matched 00:01 54Mb 63.0% Searching MSM5LLIQ_join.fq, 63.3% matched 00:01 54Mb 100.0% Searching MSM5LLIQ_join.fq, 60.2% matched 00:00 3.3Mb 0.0% Rows 00:01 319Mb 59.2% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching MSM5LLIQ_nonchimeric.fa, 0.0% matched 00:01 727Mb 100.0% Searching MSM5LLIQ_nonchimeric.fa, 90.5% matched