Total reads: 413839 Total joined: 46444 Average join len: 11.97 Stdev join len: 5.48 00:00 48Mb 0.1% Filtering 00:01 48Mb 36.3% Filtering, 100.0% passed 00:01 15Mb 100.0% Filtering, 69.6% passed 46444 FASTQ recs (46.4k) 32343 Converted (32.3k, 69.6%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5ZOJY_truncated.fa 00:00 46Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5ZOJY_truncated.fa 00:00 26Mb 30642 seqs, 17893 uniques, 16551 singletons (92.5%) 00:00 26Mb Min size 1, median 1, max 955, avg 1.71 00:00 26Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5ZOJY_derep.fa 00:00 26Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5ZOJY_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5ZOJY_derep.fa 00:00 43Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5ZOJY_derep.fa 00:00 9.9Mb Getting sizes 00:00 10Mb Sorting 1342 sequences 00:00 10Mb 0.1% Writing output 00:00 10Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 60 OTUs, 35 chimeras (2.6%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5ZOJY_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5ZOJY_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:01 26Mb 32.3% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 45.4% Build index 00:02 82Mb 100.0% Build index 00:02 93Mb 1.6% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 1/60 chimeras found (1.7%) 00:02 96Mb 1.7% Writing 59 non-chimeras 00:02 96Mb 100.0% Writing 59 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5ZOJY_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5ZOJY_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5ZOJY_join.fq, 0.0% matched 00:01 54Mb 14.5% Searching MSM5ZOJY_join.fq, 64.9% matched 00:02 54Mb 81.8% Searching MSM5ZOJY_join.fq, 66.6% matched 00:02 54Mb 100.0% Searching MSM5ZOJY_join.fq, 64.9% matched 00:00 3.3Mb 0.0% Rows 00:01 349Mb 63.5% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:02 709Mb 0.1% Searching MSM5ZOJY_nonchimeric.fa, 0.0% matched 00:02 727Mb 100.0% Searching MSM5ZOJY_nonchimeric.fa, 91.5% matched Total reads: 413839 Total joined: 46444 Average join len: 11.97 Stdev join len: 5.48 00:00 47Mb 0.1% Filtering 00:01 48Mb 59.3% Filtering, 100.0% passed 00:01 15Mb 100.0% Filtering, 69.6% passed 46444 FASTQ recs (46.4k) 32343 Converted (32.3k, 69.6%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5ZOJY_truncated.fa 00:00 46Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5ZOJY_truncated.fa 00:00 26Mb 30642 seqs, 17893 uniques, 16551 singletons (92.5%) 00:00 26Mb Min size 1, median 1, max 955, avg 1.71 00:00 26Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5ZOJY_derep.fa 00:00 26Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5ZOJY_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5ZOJY_derep.fa 00:00 43Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5ZOJY_derep.fa 00:00 9.9Mb Getting sizes 00:00 10Mb Sorting 1342 sequences 00:00 10Mb 0.1% Writing output 00:00 10Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:01 46Mb 47.0% 45 OTUs, 17 chimeras (2.7%) 00:01 46Mb 100.0% 60 OTUs, 39 chimeras (2.9%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5ZOJY_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5ZOJY_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:01 26Mb 83.5% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 79.0% Build index 00:02 82Mb 100.0% Build index 00:02 94Mb 1.6% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 1/60 chimeras found (1.7%) 00:02 96Mb 1.7% Writing 59 non-chimeras 00:02 96Mb 100.0% Writing 59 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5ZOJY_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5ZOJY_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5ZOJY_join.fq, 0.0% matched 00:01 55Mb 54.0% Searching MSM5ZOJY_join.fq, 71.0% matched 00:01 55Mb 100.0% Searching MSM5ZOJY_join.fq, 64.8% matched 00:00 3.3Mb 0.0% Rows 00:01 351Mb 63.9% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:01 709Mb 0.1% Searching MSM5ZOJY_nonchimeric.fa, 0.0% matched 00:01 727Mb 100.0% Searching MSM5ZOJY_nonchimeric.fa, 93.2% matched Total reads: 413839 Total joined: 46444 Average join len: 11.97 Stdev join len: 5.48 00:00 47Mb 0.1% Filtering 00:00 15Mb 100.0% Filtering, 69.6% passed 46444 FASTQ recs (46.4k) 32343 Converted (32.3k, 69.6%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5ZOJY_truncated.fa 00:00 46Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5ZOJY_truncated.fa 00:00 26Mb 30642 seqs, 17893 uniques, 16551 singletons (92.5%) 00:00 26Mb Min size 1, median 1, max 955, avg 1.71 00:00 26Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5ZOJY_derep.fa 00:00 26Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5ZOJY_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5ZOJY_derep.fa 00:00 43Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5ZOJY_derep.fa 00:00 9.9Mb Getting sizes 00:00 10Mb Sorting 1342 sequences 00:00 10Mb 0.1% Writing output 00:00 10Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 60 OTUs, 40 chimeras (3.0%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5ZOJY_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5ZOJY_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:00 25Mb 100.0% Masking 00:00 26Mb 0.1% Word stats 00:01 26Mb 0.3% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 42.7% Build index 00:02 82Mb 100.0% Build index 00:02 93Mb 1.6% Search 0/1 chimeras found (0.0%) 00:02 96Mb 100.0% Search 1/60 chimeras found (1.7%) 00:02 96Mb 1.7% Writing 59 non-chimeras 00:02 96Mb 100.0% Writing 59 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5ZOJY_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5ZOJY_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5ZOJY_join.fq, 0.0% matched 00:01 55Mb 10.3% Searching MSM5ZOJY_join.fq, 69.0% matched 00:02 55Mb 51.5% Searching MSM5ZOJY_join.fq, 70.9% matched 00:03 55Mb 97.8% Searching MSM5ZOJY_join.fq, 64.9% matched 00:03 55Mb 100.0% Searching MSM5ZOJY_join.fq, 64.8% matched 00:00 3.3Mb 0.0% Rows 00:00 532Mb 100.0% Rows 00:00 532Mb Reading pointers...done. 00:00 534Mb Reading seqs...done. 00:00 709Mb 0.1% Searching MSM5ZOJY_nonchimeric.fa, 0.0% matched 00:00 727Mb 100.0% Searching MSM5ZOJY_nonchimeric.fa, 93.2% matched Total reads: 413839 Total joined: 46444 Average join len: 11.97 Stdev join len: 5.48 00:00 47Mb 0.1% Filtering 00:01 48Mb 4.9% Filtering, 100.0% passed 00:01 15Mb 100.0% Filtering, 69.6% passed 46444 FASTQ recs (46.4k) 32343 Converted (32.3k, 69.6%) usearch v8.0.1623_i86linux32, 4.0Gb RAM (8.1Gb total), 2 cores (C) Copyright 2013-15 Robert C. Edgar, all rights reserved. http://drive5.com/usearch Licensed to: abualiga@gmail.com 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5ZOJY_truncated.fa 00:00 46Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5ZOJY_truncated.fa 00:01 26Mb 30642 seqs, 17893 uniques, 16551 singletons (92.5%) 00:01 26Mb Min size 1, median 1, max 955, avg 1.71 00:01 26Mb 0.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5ZOJY_derep.fa 00:01 26Mb 100.0% Writing /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5ZOJY_derep.fa 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5ZOJY_derep.fa 00:00 43Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5ZOJY_derep.fa 00:00 9.9Mb Getting sizes 00:00 10Mb Sorting 1342 sequences 00:00 10Mb 0.1% Writing output 00:00 10Mb 100.0% Writing output 00:00 38Mb 0.1% 0 OTUs, 0 chimeras (0.0%) 00:00 46Mb 100.0% 60 OTUs, 38 chimeras (2.8%) 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5ZOJY_raw_otus.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5ZOJY_raw_otus.fa 00:00 40Mb 0.1% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 58Mb 100.0% Reading /seq/ibdmdb/centos6/var/lib/uchime/gold.fa 00:00 25Mb 0.1% Masking 00:01 25Mb 92.8% Masking 00:01 25Mb 100.0% Masking 00:01 26Mb 0.1% Word stats 00:01 26Mb 100.0% Word stats 00:01 26Mb 100.0% Alloc rows 00:01 82Mb 0.1% Build index 00:02 82Mb 0.2% Build index 00:03 82Mb 54.2% Build index 00:03 82Mb 100.0% Build index 00:03 93Mb 1.6% Search 0/1 chimeras found (0.0%) 00:03 96Mb 100.0% Search 1/60 chimeras found (1.7%) 00:03 96Mb 1.7% Writing 59 non-chimeras 00:03 96Mb 100.0% Writing 59 non-chimeras 00:00 36Mb 0.1% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5ZOJY_nonchimeric.fa 00:00 40Mb 100.0% Reading /seq/ibdmdb/processing/HMP2/16S/1547/rschwager/anadama_products/MSM5ZOJY_nonchimeric.fa 00:00 6.1Mb 0.1% Masking 00:00 6.1Mb 100.0% Masking 00:00 6.9Mb 0.1% Word stats 00:00 6.9Mb 100.0% Word stats 00:00 6.9Mb 100.0% Alloc rows 00:00 6.9Mb 0.1% Build index 00:00 6.9Mb 100.0% Build index 00:00 40Mb 0.1% Searching MSM5ZOJY_join.fq, 0.0% matched 00:01 53Mb 0.4% Searching MSM5ZOJY_join.fq, 84.5% matched 00:02 55Mb 48.5% Searching MSM5ZOJY_join.fq, 70.7% matched 00:02 55Mb 100.0% Searching MSM5ZOJY_join.fq, 64.9% matched 00:00 3.3Mb 0.0% Rows 00:01 39Mb 5.7% Rows 00:01 532Mb 100.0% Rows 00:01 532Mb Reading pointers...done. 00:01 534Mb Reading seqs...done. 00:02 709Mb 0.1% Searching MSM5ZOJY_nonchimeric.fa, 0.0% matched 00:02 727Mb 100.0% Searching MSM5ZOJY_nonchimeric.fa, 93.2% matched